Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2277g00033 ATGGCGACGTACTTTCATGGTAATTCGGATATCCAATCAGCTGGTGCCGATGGACTCCAAACTCTTGTCCTCATGAATCCTGGCTACATCCACTATTCTGACGCGCCGCCGCACCAACCACCTTCTCACGCTTCTCACGCCACCGGCAACCTTGTCTTCCTCAATTCTACCGCAGCCTCCGCCGCCACAACTACTAATGTTGCCAGCAACAACTGCTTCACCCCCCACGCGCCACCCACTCACACCCAACAATTCGTGGGCATCCCTCTCCCCGCCGCGTCACAAGAGCTTAACCACCAGTCCATGCATGCGCATCACGACGTCTCTGCCTTGCATGGCTTCATGCCCCGCATGCAGTACAATCTCTGGAACACCATTGACCCCAACTCGGCGGCGCGTGAAGCACCACGCGCCCAGCAGGGTCTGTCTCTGAGCCTCTCCTCCCAGCAAGCAGGGTTCGGGTCTTTCCGGGTTGATCGTGAGGGTCAGGCGCCTGCTATGTCTGGTGGGTCACCGTCCTCGGCTTCTGGGGTTACAAACAATGGTGGTTCGGGGGTTCAGAGCGTTCTTCTGAGCTCAAAGTATTTGAAGGCAGCGCATGAGCTTCTAGACGAGGTGGTGAATGTTAACATTGAACTGGCAAAGAAGAGTGGTGGAGTCACTAAAGTGATTGGAGAATCATCCGCAGCAGCTAGTGGAGACGGTTCAATAGGTGGAGAAGGGAGTGGGAAGCGTAGCTCTGAGCTTTCAACTGCTGAAAGACAAGAAATTCAGATGAAGAAAGCAAAGCTAATCAACATGCTTGATGAGGTGGAGCAAAGGTATAGACAGTACCATCACCAGATGGAGATTGTGGTTTCCTCGTTCGAGCAAGCTGCAGGGATTGGCTCGGCGAGAACTTACACTGCCCTTGCACTGCAAACAATATCTAAGCAGTTTCGGTGTTTGAAAGATGCCATAACAGGTCAAATTCGAGCTGCGAATAAGAGCTTAGGAGAAGATGATTGCTTTGGAGGTAAAATTGAAAGTTCAAGGCTCAAATATGTTGACCATCAACTAAGGCAACAGCGAACTCTCCAACAATTGGGAATGATCCAGCACAATGCTTGGAGACCCCAGAGAGGATTGCCAGAAAGATCTGTTTCTGTTCTTCGTGCTTGGCTCTTTGAACACTTCCTCCACCCTTATCCCAAGGATTCAGACAAGCACATGCTTGCTCATCAAACAGGGCTTACTAGGAGCCAGGTTTCAAATTGGTTCATAAATGCTCGAGTTCGGCTTTGGAAGCCAATGGTGGAAGAAATGTACTTGGAGGAGATGAAGGAGCATGAAGAGAATGGGTCTGAGGATAAATCAAACAAGAGCAATGAAGATCCTTCTATGAAAATGGCAGCCCCACAAGAGAAAGGTCCTGCCTCTGAAACCGAAGCAAAAAGTTTCAATTCCAAACAAGACGTTTCCAAAAGCCACAACACTCCAATAGTTTCAGTTTCAAGACCATCAACATCACCACTTGGGTCAAATGTTAGAAACCACTCAGGATTCAGCTTCATTGGATCATCAGAACTAGAAGGGATCACACAAGGAAGTCCCAAGAAACCAAGGAACCATGAAATTATGCATTCACCAATTAGTGCCCCTTCAATTAACATTGATGTCAAGCCCAATGCGACAAACAATGAGCAGCTCTCAATGAAATTTGGGGATGAGGGGCAGAGCAGAGATGGCTACTCTTTTATGGGAAACCAAACGAACTTTATTGGTGGTTTTGGACAGTACCCAATTGGTGATATTGGTAGGTTTGACGCAGAGCAATTCACACCAAGGTTTTCAGGTAACGGGGTTTCCCTTACTCTTGGTCTTGACTCATTACCAGGAACACATCAAACATTTCTCCCAAACCAAAACATTCAACTTGGAAGAAGCCTGGACATAAGTGAACCAAACGAGTTTGGTGCCATAAACACTGCCTCTCCTCACTCTACAGCTGCTTATGAGAGTATCAGCATGCAAAACCCAAAGAGGTTTGCTGCACAATTGTTGCCAGACTTTGTGGCCTAA 2061 0.4813 MATYFHGNSDIQSAGADGLQTLVLMNPGYIHYSDAPPHQPPSHASHATGNLVFLNSTAASAATTTNVASNNCFTPHAPPTHTQQFVGIPLPAASQELNHQSMHAHHDVSALHGFMPRMQYNLWNTIDPNSAAREAPRAQQGLSLSLSSQQAGFGSFRVDREGQAPAMSGGSPSSASGVTNNGGSGVQSVLLSSKYLKAAHELLDEVVNVNIELAKKSGGVTKVIGESSAAASGDGSIGGEGSGKRSSELSTAERQEIQMKKAKLINMLDEVEQRYRQYHHQMEIVVSSFEQAAGIGSARTYTALALQTISKQFRCLKDAITGQIRAANKSLGEDDCFGGKIESSRLKYVDHQLRQQRTLQQLGMIQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAHQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEMKEHEENGSEDKSNKSNEDPSMKMAAPQEKGPASETEAKSFNSKQDVSKSHNTPIVSVSRPSTSPLGSNVRNHSGFSFIGSSELEGITQGSPKKPRNHEIMHSPISAPSINIDVKPNATNNEQLSMKFGDEGQSRDGYSFMGNQTNFIGGFGQYPIGDIGRFDAEQFTPRFSGNGVSLTLGLDSLPGTHQTFLPNQNIQLGRSLDISEPNEFGAINTASPHSTAAYESISMQNPKRFAAQLLPDFVA 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2277g00033 686 CDD homeodomain 370 431 IPR001356 GO:0003677
Gabi2277g00033 686 FunFam BEL1-like homeodomain protein 9 373 435 - -
Gabi2277g00033 686 Gene3D - 366 444 - -
Gabi2277g00033 686 MobiDBLite consensus disorder prediction 440 457 - -
Gabi2277g00033 686 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 96 454 - -
Gabi2277g00033 686 SMART prehox3 184 322 IPR006563 -
Gabi2277g00033 686 MobiDBLite consensus disorder prediction 161 180 - -
Gabi2277g00033 686 ProSiteProfiles 'Homeobox' domain profile. 367 430 IPR001356 GO:0003677
Gabi2277g00033 686 Coils Coil 254 281 - -
Gabi2277g00033 686 MobiDBLite consensus disorder prediction 440 508 - -
Gabi2277g00033 686 MobiDBLite consensus disorder prediction 474 508 - -
Gabi2277g00033 686 MobiDBLite consensus disorder prediction 229 253 - -
Gabi2277g00033 686 SUPERFAMILY Homeodomain-like 371 437 IPR009057 -
Gabi2277g00033 686 Pfam Associated with HOX 189 321 IPR006563 -
Gabi2277g00033 686 SMART HOX_1 370 434 IPR001356 GO:0003677
Gabi2277g00033 686 Pfam Homeobox KN domain 387 426 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2277g00033 Gabi-Chr2277 202895 207006 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2277g00033 1 686 Homeobox Transcription Factor Family AT2G35940 49.081 7.85e-179 523
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Gabi2277g00033 POX 2.5e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2277g00033 - - gmx:100810901 1057.74