Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2277g00023 ATGGATGAGATTGATGTTCCTCCATTCTTTCTCTGCCCCATTTCTTTAGAAATCATGAAGGATCCAGTGACTGTATCCACCGGTATAACCTATGACCGAGAGAATATTGAGAAGTGGCTATTTTCTAAGAAAAACAAGACATGCCCTGTCACCAAACAACCCCTTTCAGATTACGCTGATCTCACCCCAAATCACACCCTTCGGCGATTGGTTCAAGCATGGTGTACCATCAACGCTTCTCACGGCATCGAAAGGATTCCAACTCCTAAACCTCCCGTCAACAAATACCAGATTTCCAAGCTCCTTAAAGATGCTTCTCATTCTCCTTTGATGCAGATTAAGTGTCTCAGAAGGCTTAAATCCATCGCTTCTGGGAGTGAAACAAACAAACGTTGCATGGAAGCTGCAGGTGTTGTTGAATTCTTAGCAACAGTTGTAATGAATAACATCGATTCTGCATCTTTATTGCCCGAATCAGAGGCTAACCCAGGTGACGAAGCCTTAAGCATGCTCCATAATCTTCATGTATCTGAAGCTGGATTGAAGTCTCTCCTCGGCTTCAAAAACGGAGAATTCATTGATTCCTTAACAAGAGTCATGCAAAAGGGGTTCTTTGAGTCAAGAGCTTATGCAGTCTTTTTGTTGAAATCTATGACTGAAGTGGCTGAACCAGTGCAACTATTCCATCTAAGAACTGAGTTTTTTGTTGAATTAGTGCAACTCTTGAAGGACCAGATTTCCCAGAAGGTATCAAAAGCGACACTTCAGACACTAATACAACTCTGTCCTTGGGGGAGGAACAGAATCAAAGCTGTGGAAGCTGGAACTGTTCCTGTTTTGATAGAACTTCTTCTTGATTATAAGGACAGAAAACCTTGTGAAATGATGTTAGTGTTGTTGGAATCTCTGTGCCAGTGTGCTGAGGGACGAGCAGAACTGTTAAGTCATGGAGCAGGGCTTGCCATCGTGTCAAAGAAGATTCTAAGGGTTTCGACGGTGGCAAACGATAGAGCTGTGAGGATTCTGCTTTCGATTTCCAAGTTCTCTGCAACTCCAAGTGTTGTTCAAGAAATGCTGAAACTGGGTGTGGTTGCAAAACTTTGTTTGGTGCTTCAAGTGGATAGTGGAAACAAGGCCAAGGAAAAAGTAAGAGAGATACTCAAATTGCATGCTCGGGCATGGAGGAATTCTCCATGCATACCGAACAGTTTGCGTTCTTCATACCCAGCTTATGTGTGA 1239 0.4302 MDEIDVPPFFLCPISLEIMKDPVTVSTGITYDRENIEKWLFSKKNKTCPVTKQPLSDYADLTPNHTLRRLVQAWCTINASHGIERIPTPKPPVNKYQISKLLKDASHSPLMQIKCLRRLKSIASGSETNKRCMEAAGVVEFLATVVMNNIDSASLLPESEANPGDEALSMLHNLHVSEAGLKSLLGFKNGEFIDSLTRVMQKGFFESRAYAVFLLKSMTEVAEPVQLFHLRTEFFVELVQLLKDQISQKVSKATLQTLIQLCPWGRNRIKAVEAGTVPVLIELLLDYKDRKPCEMMLVLLESLCQCAEGRAELLSHGAGLAIVSKKILRVSTVANDRAVRILLSISKFSATPSVVQEMLKLGVVAKLCLVLQVDSGNKAKEKVREILKLHARAWRNSPCIPNSLRSSYPAYV 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2277g00023 412 SUPERFAMILY RING/U-box 3 81 - -
Gabi2277g00023 412 Pfam U-box domain 6 76 IPR003613 GO:0004842|GO:0016567
Gabi2277g00023 412 Gene3D - 96 396 IPR011989 -
Gabi2277g00023 412 PANTHER WDSAM1 PROTEIN 3 401 IPR045185 GO:0061630
Gabi2277g00023 412 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 84 IPR013083 -
Gabi2277g00023 412 SUPERFAMILY ARM repeat 195 375 IPR016024 -
Gabi2277g00023 412 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Gabi2277g00023 412 FunFam RING-type E3 ubiquitin transferase 1 84 - -
Gabi2277g00023 412 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Gabi2277g00023 412 CDD RING-Ubox_PUB 7 57 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2277g00023 Gabi-Chr2277 166330 167577 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2277g00023 1 410 U-box Gene Family AT3G52450 58.257 0.0 509
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2277g00023 - - gmx:100811258 676.781