Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2277g00021 ATGAATGACTTGTTCTCCACCTCCTCCTTCAGCGGGGTCCAAACGTTGCCGTCGCCGGATCACCAAGTCATTGAGATGACCGCCGCCGGCGGAGTGAACCTTGACAACTTCTTCTCAGACGTGGGGGCGATCAAGGAGGAGCTGAAGGAGCTGGAGCGACTCATGCACAGCCTCAAGAGCTCCCACGAGCAAAGCAAGACCCTTCACCATGCCAACGCCGTCAAGGACCTTCGTTCCATCATGGACGCTGATGTGGCACTCGCTCTCAAGAAAGCGAAGCTCCTTAAGCACAAATTGGAGGCACTGAACCGCTCCAATGCCGTTAATCGGAGCCTCCCCGGGTGCGGACCCGGGTCAACCTCGGAGCGGACCCGGACCTCCGTGGTTTACGGGTTGATGAAGAAGCTCAAGGACTCCATGGACAGCTTCAATGACCTCAGGCAGCATATCTCTTCAGAATACCGTGAAACCGTACAAGGCCGATATTTCACCGTCACCGGCGAGAATCTCGACGACAATACCCTTGACCTCTATATTTCTACGGGTGAGAGTGAAACTTTCCTTCAGAAAGCCATTCAGGAGCATGGCAGGGGTAGAATTCTGGACACCATTAATGAGATTCTAGAGAGGCATGATGCTGTGAAAGAGTTGGAGAAGAATCTTAAGGAGTTGCACCAAGTGTTCCTTGACATGGCAGTGATGGTGCAATCTCAAGGTGAGCATTTGGATGACATTGAGAGCCACTTGGCAAGTGCTAACTCGTTTGTGATGAGTGGGACTCAGCAGCTGCAGAGTGCAAGGAATCACCAGAAGAACACCCGGAAATGGACCTGTTATGCTATTATCCTTCTTCTAGTTATCATCTTGTTTGTGGTGCTCTTCACTGTGAGACCATGGCAACTATATTCCAGTGTTGGTAATAATAATGGTAGCCACCCTTCTCCGGTTCAAACACCTCCTCCTCCTCCTGCAGCTTAA 978 0.5133 MNDLFSTSSFSGVQTLPSPDHQVIEMTAAGGVNLDNFFSDVGAIKEELKELERLMHSLKSSHEQSKTLHHANAVKDLRSIMDADVALALKKAKLLKHKLEALNRSNAVNRSLPGCGPGSTSERTRTSVVYGLMKKLKDSMDSFNDLRQHISSEYRETVQGRYFTVTGENLDDNTLDLYISTGESETFLQKAIQEHGRGRILDTINEILERHDAVKELEKNLKELHQVFLDMAVMVQSQGEHLDDIESHLASANSFVMSGTQQLQSARNHQKNTRKWTCYAIILLLVIILFVVLFTVRPWQLYSSVGNNNGSHPSPVQTPPPPPAA 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2277g00021 325 SMART SynN_4 29 155 IPR006011 GO:0016020
Gabi2277g00021 325 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 204 266 IPR000727 -
Gabi2277g00021 325 Pfam Syntaxin 36 239 IPR006011 GO:0016020
Gabi2277g00021 325 Gene3D - 201 297 - -
Gabi2277g00021 325 SUPERFAMILY t-snare proteins 32 259 IPR010989 GO:0016020|GO:0016192
Gabi2277g00021 325 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 31 161 - -
Gabi2277g00021 325 ProSitePatterns Syntaxin / epimorphin family signature. 210 249 IPR006012 GO:0005484|GO:0006886|GO:0016020
Gabi2277g00021 325 SMART tSNARE_6 199 266 IPR000727 -
Gabi2277g00021 325 FunFam Syntaxin 132 197 297 - -
Gabi2277g00021 325 Gene3D - 32 163 - -
Gabi2277g00021 325 Coils Coil 34 64 - -
Gabi2277g00021 325 CDD SynN 34 191 IPR006011 GO:0016020
Gabi2277g00021 325 PANTHER SYNTAXIN 45 288 IPR045242 -
Gabi2277g00021 325 Pfam SNARE domain 242 292 IPR000727 -
Gabi2277g00021 325 CDD SNARE_syntaxin1-like 203 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2277g00021 Gabi-Chr2277 129779 131256 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2277g00021 28 325 SNARE and Associated Proteins AT3G11820 68.852 2.69e-139 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2277g00021 K08486 - cave:132191796 422.165