Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2277g00020 ATGAACGACTTGTTATCTAGCCCCAACAGCAAAAATCACCAGCATGTGATCGAGATGGCTGAAGGAACCATGAACCTTGAAAAGTTCTTCGAGGAAGTGGAGTCTGTTAAGGAGGAGCTCAAGGAACTAGAGCGCCTCCACCATAGCCTTCGATCCTCCAACGAACAAAGCAAGACCCTTCACAGCGCCAAAGCTGTCAAGGACCTTCGTTCTCGCATGGACTCTGACGTGACTCTCTCTCTCAAGAAAGCCAAGCTGGTTAAAGTCCGGTTGGAGGCCCTCGACCGGTCCAACGAAACCAGCAGGTCCTTGCCCGGTTGCGGACCCGGTTCGTCCTCCGACCGAACCCGGACCTCCGTGGTGAGCGGGTTGAGGAAGAACCTGAAAGATTCCATGGAGAGTTTCAACAACCTTAGGGAGCAGATATCCTCAGAGTACAGAGACACCGTACAACGTAGATACTACACTGTCACCGGTGAAAATCCGGATGACAAAACCGTTGACCTCCTCATCTCTACCGGTGAGAGTGAAACATTCTTACAGAAAGCCATACAACAACAAGGTAGAGCGAGCGTGATGGACACGATCCAAGAGATCAAGGAGAGGCATGGTGCGGTGAGAGAGATAGAGAGGAATCTAAAGGAGCTGCATCAGGTGTTCATGGACATGGCAGTGTTGGTGCAAACACAAGGGGAACAATTGGATGACATAGAGAGCCACGTGGCAAGAGCGAATTCGTACGTGAGGGGAGGGACACAGCAGTTGCAGGTCGCTAGGAAGCATCAGAAGAATACCCGTAAATGGAGCTGTATTGCCATCATACTGTTGCTCATTATCATATTGGTTATAGTTCTCCCTATTGTTTTAAGAAACTGA 876 0.4989 MNDLLSSPNSKNHQHVIEMAEGTMNLEKFFEEVESVKEELKELERLHHSLRSSNEQSKTLHSAKAVKDLRSRMDSDVTLSLKKAKLVKVRLEALDRSNETSRSLPGCGPGSSSDRTRTSVVSGLRKNLKDSMESFNNLREQISSEYRDTVQRRYYTVTGENPDDKTVDLLISTGESETFLQKAIQQQGRASVMDTIQEIKERHGAVREIERNLKELHQVFMDMAVLVQTQGEQLDDIESHVARANSYVRGGTQQLQVARKHQKNTRKWSCIAIILLLIIILVIVLPIVLRN 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2277g00020 291 SMART SynN_4 21 147 IPR006011 GO:0016020
Gabi2277g00020 291 Gene3D - 185 289 - -
Gabi2277g00020 291 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 196 258 IPR000727 -
Gabi2277g00020 291 MobiDBLite consensus disorder prediction 98 119 - -
Gabi2277g00020 291 ProSitePatterns Syntaxin / epimorphin family signature. 202 241 IPR006012 GO:0005484|GO:0006886|GO:0016020
Gabi2277g00020 291 Gene3D - 23 156 - -
Gabi2277g00020 291 PANTHER SYNTAXIN 34 279 IPR045242 -
Gabi2277g00020 291 SMART tSNARE_6 191 258 IPR000727 -
Gabi2277g00020 291 Pfam SNARE domain 232 284 IPR000727 -
Gabi2277g00020 291 SUPERFAMILY t-snare proteins 24 251 IPR010989 GO:0016020|GO:0016192
Gabi2277g00020 291 Pfam Syntaxin 28 231 IPR006011 GO:0016020
Gabi2277g00020 291 Coils Coil 121 145 - -
Gabi2277g00020 291 Coils Coil 26 56 - -
Gabi2277g00020 291 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 23 153 - -
Gabi2277g00020 291 CDD SynN 26 183 IPR006011 GO:0016020
Gabi2277g00020 291 FunFam Syntaxin 132 189 289 - -
Gabi2277g00020 291 CDD SNARE_syntaxin1-like 195 256 - -
Gabi2277g00020 291 MobiDBLite consensus disorder prediction 97 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2277g00020 Gabi-Chr2277 125148 126888 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2277g00020 22 270 SNARE and Associated Proteins AT3G11820 75.100 8.78e-141 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2277g00020 K08486 - gmx:100808718 407.142