Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2277g00017 ATGGCTGCTGCTACACCTTCTGTTTCCTCTTCTACCTTCAATACTATCTGCAACCTCTCCTTGACTCACTTTTCCATTTCACTCACCAGCAACTTCCCTCAAAGACCCATATCCCTGAAACCCCTCAATCTCAACCTCAAGTCCCAAAGTTTCACTCTTTCCCCTCTTTCACTTCACCGTCTTCGTCCACATTCCACTGCCTTCGATGGATTTGAAGTGTCTCAAGACATCACAGTGTCCCAACAAGACGACCCAGAACCTGAAACATTTGATAAACCACAACAAGAGGAAGAGCAGAAGGTATCGGATTCAAACGATGATGGGAGGCTCTATGTTGGAAACTTGCCTTATTCAATTACTTCTTCTCAATTGTCTGAGCTCTTTGCTGAAGCTGGCACTGTGGTCTCTGTTCAGATCGTGTATGATCGTGTAACTGATAGGAGCAGAGGATTTGCATTTGTTACAATGGGGAGTGTTGATGAAGCTAAAGAAGCAATTCGAATGTTTGATGGCTCTCAAGTTGGTGGTAGGACTGTTAAGGTAAACTTCCCAGAGGTGCCCAAAGGAGGTGAAAGGTTAGTAATGGGGCCAAAAGTAAGGAACGACTACAAAGGCTTTGTAGACAGCCCTCATAAGATCTATGCTGGAAACCTTGGCTGGGGACTAACCTCAAGGGATCTTAGAGATGCTTTTGTTGAACAGCCAGGCTTATTGAGTGCCAAGATCATCTATGAGAAGGACAGTGGAAGATCCCGTGGTTATGGCTTTGTATCTTTCCAAACTGCTGAGGATGCAGAGGCTGCTTTGAACGTTATGAACGGTGTGGAGGTTCAAGGTCGACCCTTGCGATTGAATTTGGCTGCACCAAGGACGCCTTCATCACCACCAGTGATTGAGGAAAATACAGGAAGTAATGTTAATAGCTCGGAACTGCTGTCTAGTGCCAGCACATGA 954 0.456 MAAATPSVSSSTFNTICNLSLTHFSISLTSNFPQRPISLKPLNLNLKSQSFTLSPLSLHRLRPHSTAFDGFEVSQDITVSQQDDPEPETFDKPQQEEEQKVSDSNDDGRLYVGNLPYSITSSQLSELFAEAGTVVSVQIVYDRVTDRSRGFAFVTMGSVDEAKEAIRMFDGSQVGGRTVKVNFPEVPKGGERLVMGPKVRNDYKGFVDSPHKIYAGNLGWGLTSRDLRDAFVEQPGLLSAKIIYEKDSGRSRGYGFVSFQTAEDAEAALNVMNGVEVQGRPLRLNLAAPRTPSSPPVIEENTGSNVNSSELLSSAST 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2277g00017 317 SUPERFAMILY RNA-binding domain, RBD 208 294 IPR035979 GO:0003676
Gabi2277g00017 317 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 108 186 IPR000504 GO:0003723
Gabi2277g00017 317 MobiDBLite consensus disorder prediction 295 317 - -
Gabi2277g00017 317 CDD RRM2_NsCP33_like 212 287 - -
Gabi2277g00017 317 MobiDBLite consensus disorder prediction 287 317 - -
Gabi2277g00017 317 MobiDBLite consensus disorder prediction 80 109 - -
Gabi2277g00017 317 FunFam 33 kDa ribonucleoprotein, chloroplastic 193 297 - -
Gabi2277g00017 317 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 211 289 IPR000504 GO:0003723
Gabi2277g00017 317 MobiDBLite consensus disorder prediction 85 105 - -
Gabi2277g00017 317 Gene3D - 197 295 IPR012677 -
Gabi2277g00017 317 PANTHER OS02G0815200 PROTEIN 45 290 - -
Gabi2277g00017 317 SMART rrm1_1 109 182 IPR000504 GO:0003723
Gabi2277g00017 317 SMART rrm1_1 212 285 IPR000504 GO:0003723
Gabi2277g00017 317 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 180 IPR000504 GO:0003723
Gabi2277g00017 317 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 213 283 IPR000504 GO:0003723
Gabi2277g00017 317 SUPERFAMILY RNA-binding domain, RBD 104 184 IPR035979 GO:0003676
Gabi2277g00017 317 CDD RRM1_PSRP2_like 109 188 - -
Gabi2277g00017 317 Gene3D - 64 192 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2277g00017 Gabi-Chr2277 116202 118708 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2277g00017 95 287 Eukaryotic Initiation Factors Gene Family AT3G16380 31.472 1.55e-21 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2277g00017 - - gmx:100814852 497.278