Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2277g00016 ATGGCGATGCAAACTGCTTATCTTAAAGAACATGAAGGAATTGCCCACAATTTTGTTGGGCAGTTGTCATCTGTAACTTCAGCACCCTGGTGGAATGCTTTTGGATCTCAATCCGTTTATGGGGAGTCTTGTGGCCAAATAAAGCCCTTTTCATTGGAGCTGCCTTCCTGTGTAGACCAACTTGCTGCCAGTAAGCAATCGGCAAGAGGAGCTGAACAAGTGTTGGGTAAAGGACACACAACTCAGTTTACCATCTTTCCAGATGATTGTAAAATGTCAGGTGATGCACAAAAGCCTCAGACAACCATATCACTGCAGTCATCACCTACTGATACCTACACTCGTTTTGAGCTAGGATTTAGTCAGCCTATGATCTGTGCCAAATATCCTTATACGGATCAGTTTTATGGGCTCTTCTCAACTTATGGACCTCAGATTTCGGGACGTATAATGCTGCCACTTAACATGACATCTGATGATGGACCAATCTACGTAAATGCTAAGCAGTACCATGGAATCATAAGACGTAGGCAGTCCCGCGCCAAAGCTGTACTTGACCAGAAATTGACAAAACGTCGCAAGCCCTATATGCATGAGTCACGCCATCTCCATGCAATGCGTCGACCAAGAGGATGCGGGGGTCGTTTCTTGAACACAAAGAGTTTTGTTAATGGAAATGGTAAAAGTGAAAGCAAAGTGAAAAAATCTGGTGGTGTACAATTGCAGTTCAGTGGCTCGCAGAGTTCTGAAGTCCTTCAATCTGAGGTTGGAACCTTAAATTCGTCAAAGGAGAATGGTAGTAGTCCAAACATTTCTGGGTCAGAGGTGACTAGCATGTATTCACGTGGAGGTCTTGACAGCTTTGCTGTCAATCATCTTGGATCTGCTGTCCACTCTCTGGCAGACATGTTAGATGGTGGGCGTGGTATCGTCATTCCCACCAAATGGGTTGCAGCATCAGGGAACTGCTGCAACCTTAATGTTTGA 987 0.4488 MAMQTAYLKEHEGIAHNFVGQLSSVTSAPWWNAFGSQSVYGESCGQIKPFSLELPSCVDQLAASKQSARGAEQVLGKGHTTQFTIFPDDCKMSGDAQKPQTTISLQSSPTDTYTRFELGFSQPMICAKYPYTDQFYGLFSTYGPQISGRIMLPLNMTSDDGPIYVNAKQYHGIIRRRQSRAKAVLDQKLTKRRKPYMHESRHLHAMRRPRGCGGRFLNTKSFVNGNGKSESKVKKSGGVQLQFSGSQSSEVLQSEVGTLNSSKENGSSPNISGSEVTSMYSRGGLDSFAVNHLGSAVHSLADMLDGGRGIVIPTKWVAASGNCCNLNV 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2277g00016 328 PRINTS CCAAT-binding transcription factor subunit B signature 193 216 IPR001289 GO:0003700|GO:0006355
Gabi2277g00016 328 PRINTS CCAAT-binding transcription factor subunit B signature 162 184 IPR001289 GO:0003700|GO:0006355
Gabi2277g00016 328 SMART cbf3 158 219 IPR001289 GO:0003700|GO:0006355
Gabi2277g00016 328 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 162 216 IPR001289 GO:0003700|GO:0006355
Gabi2277g00016 328 Gene3D - 159 221 - -
Gabi2277g00016 328 MobiDBLite consensus disorder prediction 252 275 - -
Gabi2277g00016 328 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 65 280 IPR001289 GO:0003700|GO:0006355
Gabi2277g00016 328 ProSiteProfiles NF-YA/HAP2 family profile. 159 219 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2277g00016 Gabi-Chr2277 104585 113338 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2277g00016 1 326 CCAAT-HAP2 Transcription Factor Family AT3G05690 46.087 2.23e-64 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Gabi2277g00016 CBFB_NFYA 1.3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2277g00016 K08064 - gmx:100527677 546.584