Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2277g00014 ATGGAGTCTGAGACAGAAGAAAGAAGAGAGGTGAGTGAACCACCGTTACCCCTTGTTCCTTCCATAACCGAAGCAGCAGCAGCAGAAGCGCCACCACTACCCTTGACTAAAAGGAAGATAACATCTGAATTGATTCAAGATTACGGAACAAGAAGATCTGTGTACAGAAAAAGACGTGAAGGGTTGTTGAAGAAGATGAAGGAGATAACCACCCTTTGTGGTATCGATGCATGTATTATCATCTATGGTCCCGGTGATGACGTACCTATGATGTGGCCATCAGCTGAAGTTACTAAACAACTACTAATTAGGTATCGTGGTCTTCCAGAGATGGATCGATTCAGAAACGTTGTTACTCAATGGAGTTATATGCAGGAGAAGACAAGAAAGATGGAAGCTGAACTTAAAAGGATCAACGAGAGGAACAACGAGAGAGAAATGCTTATTTTCATACATGAAATTTATAAGGAGGGTAAGCCTTTATCTGCTTTTCATGTTAGAGATTTGGAGCGTTTGCTTGCTTATGTTCAGGGAAAAATGAAGAATGCTCAAAAGAGAATTGGTCATGTTGTTCAACCCTCGTTGCCTGCTTCTAGTTCTTTACCTTTGGTACCTGTCTCTTGTTCTTCTCTACCGAATATGGTTGTGGAGGAACAAGTTCCGGAGCAACAACCAACCTTAAATTTGGTGAATATTGGAGTTGCCCAGATGAACAATGTTTTTGATAGTAGTAACATGAATCTACAACCACGTACATATGTTGGTAATGTTGATACGGTGCTCCCTCAGGGTAATTTTAGTGGTTTCAATAGTACAAGTGATTCGGGGATTTTGCCTCCGGGCTATTTTGGAGGTCTCATTAATGGGGATAATGATTACTTAAGAATGTTGTCTCAAAGTAATTTTGTCGGTTTTAATGCAGAGAGTCATCACTCAGGGTTAGAGGTGCTGCCTCAAGCTACTTTTGGAGGGTTCAATGTGGATAATGATCACTTATTGTCTCAAGGTAATTTTGGCGGCTTCAGTGAAGTAAGTGTTCCTTCAGGGTTAGAGGCGTTACCTCAAGGAAATTTTGGAGATTTAAATGGGTTAAGTGATCACTTAAATGTGTTGCCTCAAGGTAACTTTGGCCATTTCAATGAAGAAAGTGTTCCTACAGGGTTAGAGCCGTTGCCTCAAGCAAATTTTGGAGATTTAAATGTGTTAAGTGATGACTTAAGTGTGTTGCCTCAAGGTAACTTTGGCAGTTTCAATGCTGAAAGTGATTACTTCGGGTTAGGAGTGTTGCCACAAGGTAATTTTGGAGATAACTCTGGATCATTACCTCAAGGCAATTTTTTTGGTCTTGATGATCAAAGGGATCATTCATGGATGTTGCCTGAACTCAGTTTTGGAGGTCAAAATGTTGAAAGTGACTTGGGGATGTCTTTGCCTCCGGGAAATTTTATAGGCTTCAATGGTGAAAGTTGTTCAGGGAATTTGCATGGAAGCTTCACTGGTACTGAAATTGGAAATAATGACTTGTGGAATTCTTATGGCCATTTTGGAAGCACAATTAGTGAAAGTGATATGAGGCTGGGCAACAACATCTCAGAAGGCAACATTGATCGTGGTTTTTAA 1620 0.4049 MESETEERREVSEPPLPLVPSITEAAAAEAPPLPLTKRKITSELIQDYGTRRSVYRKRREGLLKKMKEITTLCGIDACIIIYGPGDDVPMMWPSAEVTKQLLIRYRGLPEMDRFRNVVTQWSYMQEKTRKMEAELKRINERNNEREMLIFIHEIYKEGKPLSAFHVRDLERLLAYVQGKMKNAQKRIGHVVQPSLPASSSLPLVPVSCSSLPNMVVEEQVPEQQPTLNLVNIGVAQMNNVFDSSNMNLQPRTYVGNVDTVLPQGNFSGFNSTSDSGILPPGYFGGLINGDNDYLRMLSQSNFVGFNAESHHSGLEVLPQATFGGFNVDNDHLLSQGNFGGFSEVSVPSGLEALPQGNFGDLNGLSDHLNVLPQGNFGHFNEESVPTGLEPLPQANFGDLNVLSDDLSVLPQGNFGSFNAESDYFGLGVLPQGNFGDNSGSLPQGNFFGLDDQRDHSWMLPELSFGGQNVESDLGMSLPPGNFIGFNGESCSGNLHGSFTGTEIGNNDLWNSYGHFGSTISESDMRLGNNISEGNIDRGF 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2277g00014 539 CDD MADS_SRF_like 36 118 IPR033897 GO:0000981|GO:0000987|GO:0045944
Gabi2277g00014 539 Coils Coil 166 186 - -
Gabi2277g00014 539 ProSiteProfiles MADS-box domain profile. 35 83 IPR002100 GO:0003677|GO:0046983
Gabi2277g00014 539 Coils Coil 124 144 - -
Gabi2277g00014 539 PANTHER MADS BOX PROTEIN 38 184 - -
Gabi2277g00014 539 Gene3D - 47 146 IPR036879 GO:0003677|GO:0046983
Gabi2277g00014 539 SMART madsneu2 35 94 IPR002100 GO:0003677|GO:0046983
Gabi2277g00014 539 MobiDBLite consensus disorder prediction 1 25 - -
Gabi2277g00014 539 SUPERFAMILY SRF-like 37 128 IPR036879 GO:0003677|GO:0046983
Gabi2277g00014 539 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 45 86 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2277g00014 Gabi-Chr2277 76941 78811 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2277g00014 37 212 Type I MADS-box Gene Family AT1G65300 27.841 5.22e-24 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gabi2277g00014 SRF-TF 4.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2277g00014 - - mtr:120579700 172.555