Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2275g00001 ATGTCTCAACTTGCTCAGCAAGAGAATAATGCAAACGCAGCGATGACACGGTGGACTAGGGAAGATGACATTGCCTTTGAAGACGCCCTCGCTATCATCCCAACGGGCATGCCTGAGCCAGAATATTGGGAGAAAGTAGCCGCTCTTGTTCCTGGAAAATCACCGACGGAGGTCCGAAATTATTATTGGGTATTGGTCCATGGCTTGTTCGAGATTGAGTCTGGTCGAGTGCCGTTACCGCACTTGTTGCTGGTGCCGATGGAGGCCAACGGAGGTAACTATGAAAAGAAGAGGTTGCCATGGACCGAAGAGGAACACAAGTTATTTCTCGCTGGGCTGCAGATAATTGGCAAGGGAGATTGGAAAAATATTGCTAGATATTTTGTTAAGACAAAAAATGCAGCACAAATTGCTAGTCATGCCCAAAAATACTTCCTTCATCTCGCTCAAGGTGCCCAAAAGAAGGAAAGGAAAAGAACAAGCATCCATGACATAACCTTAAATGCTGAAATCGACATTGTGATTCCTGCTGATGATGTTCAAATGCTTCAACACTTACCAAAATTGCAACAGGCACATGAATAG 585 0.4496 MSQLAQQENNANAAMTRWTREDDIAFEDALAIIPTGMPEPEYWEKVAALVPGKSPTEVRNYYWVLVHGLFEIESGRVPLPHLLLVPMEANGGNYEKKRLPWTEEEHKLFLAGLQIIGKGDWKNIARYFVKTKNAAQIASHAQKYFLHLAQGAQKKERKRTSIHDITLNAEIDIVIPADDVQMLQHLPKLQQAHE 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2275g00001 194 SUPERFAMILY Homeodomain-like 6 76 IPR009057 -
Gabi2275g00001 194 FunFam transcription factor MYB1R1 99 150 - -
Gabi2275g00001 194 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 13 168 IPR043363 -
Gabi2275g00001 194 Gene3D - 10 79 - -
Gabi2275g00001 194 ProSiteProfiles Myb-like domain profile. 10 66 IPR001005 -
Gabi2275g00001 194 Gene3D - 99 150 - -
Gabi2275g00001 194 FunFam Transcription factor SRM1 10 79 - -
Gabi2275g00001 194 CDD SANT 17 66 IPR001005 -
Gabi2275g00001 194 ProSiteProfiles Myb-like domain profile. 93 145 IPR001005 -
Gabi2275g00001 194 NCBIfam myb-like DNA-binding domain, SHAQKYF class 96 147 IPR006447 GO:0003677
Gabi2275g00001 194 CDD SANT 100 145 IPR001005 -
Gabi2275g00001 194 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 93 149 IPR017930 -
Gabi2275g00001 194 SMART sant 97 147 IPR001005 -
Gabi2275g00001 194 SMART sant 14 68 IPR001005 -
Gabi2275g00001 194 SUPERFAMILY Homeodomain-like 94 149 IPR009057 -
Gabi2275g00001 194 Pfam Myb-like DNA-binding domain 98 145 IPR001005 -
Gabi2275g00001 194 Pfam Myb-like DNA-binding domain 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2275g00001 Gabi-Chr2275 9126 10549 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi2275g00001 Myb_DNA-binding 8.6e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2275g00001 - - mcha:111006345 166.392