Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2273g00023 ATGGAGTTTGTGGGGAAAACTGTCAAGAAAGAGGTGAAGGGGTTTGGGGTTATCTCGGGAACTGTGAAATCTTACGACCCTTCCTCTGGGTTTGTCGAGATCCTTTACGAAGATGGTGATTCTGAGGAGTTGGAATCCTCTGAGGTCGCTTCCATCTTGGAATTTCAGCCGGAGCTTGCCAAGGCTAAGTCTCGGGTCGGTCGGAAGCCCAAAAAGCGGCGTCGTGTTGACCGGAAGTTCGAAACCGGAGCTGCTTCAGGTAATGTTAGGGAGAATTTGGGGGCGGAGGGTAGTGAATTTAGGGGGATTTTGTATGAGAATGCTTCTGATGGTGGGAATTCGGTAGTGTGTGGTGAATTAGGTTGTGGAATTGAGAGGGGCTCGAGTGAGGGAAATGGGAATGGAGGGAATGTTATGTGTAGTGTGAATGCGGGTGTAATTGAAAACGGGAGTGAAGAAACTTTAGGAAAGGAAATTGTGTTTGAAGAGAATTTGAATAGGAGTGTCTCTGCTAATGGGAATTGTGTTATAAATGGGCTTGATTTGAATGCTAGGCTTAATCTGAACGAGGATTTTAATCTGAATGACGTGTGTAGTTCGCCTGTTAACACTGAGGGTTGTTTGAAGAGAAGAGATTGTATTGATTTGAATTTGGATGTGAATAACGAGGACGATGCCAGCCTGAATGCGGGTTATTTGGGTTGTTCTGGAGGGGAAACATGGCAGCGGGAATGTAATTTTGATTTGAATGTGGAGGTATGTGAAGAAGTTAAGGAAACTCAGGGTGATGCTGCTGGAAAGGGACATTCTGAGGTAGGTGCTTTGTTCGGCAAGACGGGGAAGCTCCAAGAGGAAATGGAAAATGTTAATCATATATCTATAGAAGAAGACGGTGTTCATGGTAACTCAAATGATGTCTTGGATGCTGTCAAAGTGGAGGTAATTCATGTTTCTGCTGAGCATGCGGCTAAAGATGCTTCCTTGTGTTTGATTGCGGAAAAGGAAGGAGATGATGGCAAAGAAGGTGCAGAAGCTATTGATTCTCTTCAGGTTTCACATGCTAATTCTGTGAGGGATTGTGATTCTGTGGAGGTTCAGCATATGGGTTGTCCTTCTGAAGCTGGTTTTTCCATAATTCATGAATACCAAGATGATCCAGGAAGTCCATGCAAACATGGAAGTAGCCGAAGGAAGAGAAGAAAACTATCAGACAATCCAAAAACCACCCCAGAGACGGTTTTAAGGAGGAGTTCTCGCAGAGCATTAGCTAGAAAACAGGTTTCTAGCACCATATCATTGCAGGTGACAGATGATCCTTTGTTGTCATTGGGAACCAGTGCCTTGGCAGAAGAAAAACCTGTAATTTCTGGTTCTGAGAAAGATGAACAGTGCAGTGTTTCACTGCCAAAGCTGCAATTACCCCCTTCTTCTCAAAATTTGAGTTTAGATGATGTTCCTGTCCTTGAACTTTTTTCTATTTACGCTTGTTTAAGATCATTCAGTACTTTATTATTTTTGAGTCCATTTGAGTTGGAGGATCTTGTAGCTGCACTGAAGTCTGAAAACCCAAGTATACTATTTGACAGCATTCATGTTTCTATTTTGCAAGCTCTGAGAAAGCATTTGGAATACCTTTCCAATGAGGGTTGCCAATCTGCATCCAATTGCCTGAGAAATCTTAACTGGGATTTCTTGGACCTGGTCACATGGCCCATTTTCATGGCTGAGTACCTTCTGATTCATGGTTCAGGATTTAAAACTGGTTTTGATCTTAACCACTTAATGTTCAGAACTGACTACTACAAACAACCTGTAATTGTGAAGGTTGAGATTCTTCAGCACCTGTGTGATGACATGATTGAAGTGGAAGCCATAAGGTCAGAGCTTAACAGAAGATCTTTGGTAACTGAGACCGGTATGGGTTTTGATCAGAATATGTATTTTGACACTTGCAAGAAAAAAAGAGCTGTAATGGATGTGTCTGGTGGCTCTTGCTTGACTGAGCAGATCGTGGATGACACAACTGACTCGAACAGTGATGAATGCTGCCTTTGCAAGATGGATGGGAGTTTAATATGCTGTGATGGTTGCCCTGCTGCATTCCACTCAAGGTGTGTGGGCATTGAAAGTGACAATCTGCCTGAAGGTGACTGGTATTGCCCTGAGTGTGCAATTGGTGCACACAATGCTTTGATGAAATCACGAAGGTCACTTCGAGGAGCAGACTTATTAGGGATTGATCTTCATGGCTGTCTTTATTTTAGCAGCTGTGGTTACCTGTTGGTGTCAAACTCATCTGATGCGGGTTCCTCGTTCAATTACTACCACAAAAATGATCTACATGTAGTAATTGAATTTCTAAAGTCTATGGATACTTTATATGAAGGCATATTAATGGCTATCTACAAACATTGGGATATCCCTTCTGACATATGTGCAGGTGCTAGTAACTTGGCAGTCTTTAATAAAAGTTCCTGCAAGAACATGCTTATGAAGGGAGAATATTCTGCTGTGAATGCATGCTTAGCACCTTTTCCTTCTTCAGAAACATGTTTGGACAATAGTCGGGCTGACGATCAAAGGAAGTTGGATGAAAACTCAACTATTGATTGTTGTAATCATCCTGGTCATGAGTTTCCAAAAGCTGGGAACCGCTTAGACTCAATGACAACTATAGAAAGTCCTTGTGTTGCTTCAGAAGGATCAGCTGATACCACACAAATGAGATCAGGCACAGAGAATGTTCCAATGCATGGGCTTTATGATTCCAATAGATCTGATGAATCCTTGGATCAGTCAGGAATACCAGGAAAACACCATCTCATTGGTGACTGTTCTTTGACATCTTCAAGCTTAGATGTGGGACGTAAAATAAACTTAAGATCTGTAGGTGCTAGTGGTACCCCCTCCGTGGACAATAAGGATACTTCAGAATTACCTTGTGGGATTGACTACACAAATTATTACAGCTTTGCCCGAATGGCCTCATTAGTTGCACAAGAGTTGATGTGTAAGTCACCTGAAAAGATGAATAAGAGTTTTGCGATGTCTGAAGAAGAAATAGTTTCTGACCAAGCAAAAGCCATTATGAAGAAATGTACTAACTTTTGTTGGCCAAGTGTTCAAAACCTGAATGCAGCTGCCCAAAAGGAAAAATGTGGGTGGTGCTTTTCTTGCAAAGTTGCAAATGATGACAGGGATTGCTTGTTTATTTCTGTGGTGAAACCTGTTTTGGAAGTGTCTAAAAGTGCTTTAGTTGGGCTTCAACCCAGGAAGACCCAGAATGGACATCTTAGAGAGATCATATGTCTTATTCTCTCCCTTGAGGTTCGATTACGTGGACTTCTGTTGGGTCCATGGTTGAATCTGCAACAAGCTGATCTTTGGCAAAAGGATCTTTTGAAGACATCTGATTTTCTTCCTGTTAAAAGATTATTGCTTCTTTTAGAATGCAATTTGCGGCTTCGTGCACTTTCAGCAGATTGGTTAAAGCATGTGGATTCTGGTGTTACTATGGGATCAGCTACTCATGTTGTGGTCAATACATCACGCACATCTTCAAGGCATGGTATTGGAAGGAAAAGGGCTAGGTATTCAGATATTGAATCATCTTCAAACGCTACCGGTGGTTTGGGAATGTATTGGTGGAGAGGTGGTAGGCTTTCCCGAAAATTGTTTAATTGGAAGGTTTTGCCTCGCTCATTGGTTACGAAGGCCGCTAGACAAGCTGGTTGTGTGAAGATACCAGGCATTTTATACCCTGAGAATTCAGATTTTGCAAGGAGAAGCAGATATGTTGCCTGGCGAGCTGCTGTTGAGATGTCAACAAGTGTTCAGCAGCTTGCTTTGCAGGTTAGAGAGCTTTATTCTAACATAAGGTGGCATGATATTGAGAATAACCATCCTCTATATATGTTAGACAAGGAATCTAGAAAATCGATCAGGCTGTTCAAAAAAGCAATTGTACGCAGGAAATGCACTGAAGGGAAATCTGTGAAGTACCTTCTTGATTTTGGGAAGAGAAGGACTATTCCAGATATTGTTAATAGACATGGTACTTTGTTGGAACAATCCTCAAGTGAGAGGAAAAAATATTGGCTGGATGAGTCTTATGTTCCCTTGCATCTTTTAAAGAATTTTGAGGAAAAAAGAATTGTCCGTAAGTCCAGTGATAAGAAACTAGGAAAAATTCTTGAGATTGGTAGAGTGAACAAGAGGGTTCCTCAACAAAGTGTATTTCCATATTTGTTTTCTAGAATGGAAAGATCTGATTGTCATCAGTGTGGGCACTGCAACAAAGATGTTCCAATCAGGGATGCTGTGAGCTGCCTTTATTGCAAAGGATATTTCCATAAGAGGCATGTCAGGAAATTGGGTGGCACAAGAACTACTGAATGCACATATTCATGTCACAGATGCCAGGGTGGGTTGCGTGTAAAGACTAATACTAATTCTAATAGAAGGAAAGTTGACTCAAAGCTGCAGAAGATTCAATCACAGAAATGTAAAAATGTCCCTTCAGTTTGTAAATCAGTGAACCTTAAAGGCAATAAAAAGGCATTGAGTAAGGTGCGACAGGGGATATCTCGAACCAGTAAGAAGATGCCATCCAGTATACCTCTTCGCCGTTCTACTAGGAAGGCCAAATCCTTGTATCTGCAAAATCAAATGAATGGAGGACGTAAAAAAGGAATTCAAAGTAAAAAGAATGTAGGACGTAAAAAAGGAAAGCAAAGTAAGTCCAAGAAGGTGACCTATCAGAAGCCCAAGGAAACTAATGGGCAACGTAAGAAGTTGGCAGTAACTATTGCACGTAAGAAAAGGACAAAAATCTGTAGCAGTTACTGGCTTAATGGTCTTCGGTTGTCTAGAAAGCCGAATGATGAACGAGTAATGCTGTTTAAAGAGAAAAAGCATGTTCTCTCCTCTGAAGATTTGTCTGGCTCTCTTGAACATCCTAAATGCTGCCTTTGCTGTGGAGATGGATGTACTTTAAATTATATTGCTTGTGAAATCTGTGGAGATTGGTTTCATGGGGACGCTTTTGAACTCACCGTAGAAAAAGCCAGACAAGTCATTGGATTTAGGTGCCATGTTTGTCGTGATAGGACTGCTCCAATCTGCCCCCATATGAAGAGTAACGGATTGTCTCACGCTGAAAGCAATGCTGCAACTGAGTGTGCAGAGGAATTATCTAATCCTGTTTCTCTCCAACCTTTGAGTAAGATCCGTTGCAATTAA 5241 0.4154 MEFVGKTVKKEVKGFGVISGTVKSYDPSSGFVEILYEDGDSEELESSEVASILEFQPELAKAKSRVGRKPKKRRRVDRKFETGAASGNVRENLGAEGSEFRGILYENASDGGNSVVCGELGCGIERGSSEGNGNGGNVMCSVNAGVIENGSEETLGKEIVFEENLNRSVSANGNCVINGLDLNARLNLNEDFNLNDVCSSPVNTEGCLKRRDCIDLNLDVNNEDDASLNAGYLGCSGGETWQRECNFDLNVEVCEEVKETQGDAAGKGHSEVGALFGKTGKLQEEMENVNHISIEEDGVHGNSNDVLDAVKVEVIHVSAEHAAKDASLCLIAEKEGDDGKEGAEAIDSLQVSHANSVRDCDSVEVQHMGCPSEAGFSIIHEYQDDPGSPCKHGSSRRKRRKLSDNPKTTPETVLRRSSRRALARKQVSSTISLQVTDDPLLSLGTSALAEEKPVISGSEKDEQCSVSLPKLQLPPSSQNLSLDDVPVLELFSIYACLRSFSTLLFLSPFELEDLVAALKSENPSILFDSIHVSILQALRKHLEYLSNEGCQSASNCLRNLNWDFLDLVTWPIFMAEYLLIHGSGFKTGFDLNHLMFRTDYYKQPVIVKVEILQHLCDDMIEVEAIRSELNRRSLVTETGMGFDQNMYFDTCKKKRAVMDVSGGSCLTEQIVDDTTDSNSDECCLCKMDGSLICCDGCPAAFHSRCVGIESDNLPEGDWYCPECAIGAHNALMKSRRSLRGADLLGIDLHGCLYFSSCGYLLVSNSSDAGSSFNYYHKNDLHVVIEFLKSMDTLYEGILMAIYKHWDIPSDICAGASNLAVFNKSSCKNMLMKGEYSAVNACLAPFPSSETCLDNSRADDQRKLDENSTIDCCNHPGHEFPKAGNRLDSMTTIESPCVASEGSADTTQMRSGTENVPMHGLYDSNRSDESLDQSGIPGKHHLIGDCSLTSSSLDVGRKINLRSVGASGTPSVDNKDTSELPCGIDYTNYYSFARMASLVAQELMCKSPEKMNKSFAMSEEEIVSDQAKAIMKKCTNFCWPSVQNLNAAAQKEKCGWCFSCKVANDDRDCLFISVVKPVLEVSKSALVGLQPRKTQNGHLREIICLILSLEVRLRGLLLGPWLNLQQADLWQKDLLKTSDFLPVKRLLLLLECNLRLRALSADWLKHVDSGVTMGSATHVVVNTSRTSSRHGIGRKRARYSDIESSSNATGGLGMYWWRGGRLSRKLFNWKVLPRSLVTKAARQAGCVKIPGILYPENSDFARRSRYVAWRAAVEMSTSVQQLALQVRELYSNIRWHDIENNHPLYMLDKESRKSIRLFKKAIVRRKCTEGKSVKYLLDFGKRRTIPDIVNRHGTLLEQSSSERKKYWLDESYVPLHLLKNFEEKRIVRKSSDKKLGKILEIGRVNKRVPQQSVFPYLFSRMERSDCHQCGHCNKDVPIRDAVSCLYCKGYFHKRHVRKLGGTRTTECTYSCHRCQGGLRVKTNTNSNRRKVDSKLQKIQSQKCKNVPSVCKSVNLKGNKKALSKVRQGISRTSKKMPSSIPLRRSTRKAKSLYLQNQMNGGRKKGIQSKKNVGRKKGKQSKSKKVTYQKPKETNGQRKKLAVTIARKKRTKICSSYWLNGLRLSRKPNDERVMLFKEKKHVLSSEDLSGSLEHPKCCLCCGDGCTLNYIACEICGDWFHGDAFELTVEKARQVIGFRCHVCRDRTAPICPHMKSNGLSHAESNAATECAEELSNPVSLQPLSKIRCN 1746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2273g00023 1746 MobiDBLite consensus disorder prediction 1520 1597 - -
Gabi2273g00023 1746 MobiDBLite consensus disorder prediction 1566 1583 - -
Gabi2273g00023 1746 SUPERFAMILY FYVE/PHD zinc finger 675 732 IPR011011 -
Gabi2273g00023 1746 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1620 1707 IPR013083 -
Gabi2273g00023 1746 CDD PHD1_AIRE 681 723 - -
Gabi2273g00023 1746 MobiDBLite consensus disorder prediction 1524 1539 - -
Gabi2273g00023 1746 Pfam PHD-finger 682 724 IPR019787 -
Gabi2273g00023 1746 ProSiteProfiles DDT domain profile. 484 544 IPR018501 -
Gabi2273g00023 1746 MobiDBLite consensus disorder prediction 1548 1563 - -
Gabi2273g00023 1746 SMART testlast3 484 544 IPR018501 -
Gabi2273g00023 1746 ProSiteProfiles Zinc finger PHD-type profile. 679 726 IPR019787 -
Gabi2273g00023 1746 Pfam DDT domain 488 540 IPR018501 -
Gabi2273g00023 1746 PANTHER PHD FINGER FAMILY PROTEIN 2 1706 - -
Gabi2273g00023 1746 SUPERFAMILY FYVE/PHD zinc finger 1653 1707 IPR011011 -
Gabi2273g00023 1746 SMART PHD_3 1655 1701 IPR001965 -
Gabi2273g00023 1746 SMART PHD_3 681 724 IPR001965 -
Gabi2273g00023 1746 MobiDBLite consensus disorder prediction 381 419 - -
Gabi2273g00023 1746 ProSitePatterns Zinc finger PHD-type signature. 682 723 IPR019786 -
Gabi2273g00023 1746 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 673 740 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2273g00023 Gabi-Chr2273 191722 208581 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2273g00023 1 1713 PHD Transcription Factor Family AT5G12400 41.433 0.0 1137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Gabi2273g00023 DDT 2.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2273g00023 - - gmx:100800973 2599.31