Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2273g00011 ATGCTTCAAAGTTTGGTCCCTCGACCTCCTCTCAATTCCAATCCTAACGCCATGAAAACGAAGCGCGCCGACCGCGACCGCGACGACGGCGATTCCCCTCCTGAGGAAGCCTCCTTCAAGCGACCGAACTCCGGCGAGAAGACGGTGGTGGAAAGCGAGGGACGCGAGGAGGAACAAGCCTTCGAACCTGAATCCGAAGGCGAGTCTAGTGGCCTCAAACTCTTAGGGCTTTTGCTCCAATGCGCAGAGTGCGTCGCCATGGACAACCTCAACTTCGCCAACGACCTCTTGCCGGAGATCGCCGAGCTCTCCACGCCGTTCGGCACGTCGCCGGAGCGCGTCGGCGCGTACTTCGCTCAGGCGCTGCAGGCGCGAGTTGTGAGCTCCTGCCTAGGCGCTTACTCGCCGCTCACCACCAAATCGGTTGCCCTAACTCAGTCGCAGCGAATCTTTAACGCGTTCCAATCCTATAACTCGGTCTCGCCGTTGGTGAAGTTCTCGCACTTCACCGCGAACCAGGTAATCTTCCAGGCACTGGATGGCGAGGATCGCGTCCACATCATCGACGTTGACATCATGCAGGGACTTCAATGGCCAGGATTGTTCCACATCCTGGCATCACGCTCGAAGAAGATCCGCTCCATGAGAATCACCGGATTCGGATCCTGCTCTGAGCTGCTCGAGTCAACAGGGAGGAGACTCGCCGACTTCGCGAGTTCGCTCGGTCTTCCGTTCGAGTTCCACCCGGTGGAAGGAAAAATCGGGAGCGTGACGGAGGTGAGTCAACTCGGAGTGAGGCCGAACGAGGCAATTGTCGTGCACTGGATGCACCATTGTTTGTATGACATAACCGGCAGCGATTTGGGGACGTTGAGATTGCTGACTCAGCTGAGGCCAAAGCTGATCACCACCGTCGAACAAGATCTGAGCCACGCTGGGAGCTTCCTCGCGAGGTTCGTGGAGGCCTTGCATTATTACAGCGCGTTGTTCGACGCGCTGGGAGATGGATTGAGTGTGGACAGCCTCGAGAGGCATATGGTGGAGCAGCAGCTGTTGGGCTGCGAGATCAGGAACATCGTGGCCGTTGGTGGGCCCAAGAGGACCGGTGAGGTTAAGGTGGAGAGATGGGGGGATGAGTTGAGACGGGTCGGGTTTCGACCCGTTTCACTCCGGGGCAACCCGGCTGCACAAGCTAGCTTGTTGCTAGGTATGTTCCCTTGGAAAGGGTATACGCTGGTGGAGGAGAATGGTTCCCTTAAGCTTGGGTGGAAGGATCTATCTCTGTTGATAGCCTCTGCTTGGCAACCGTCTGATTTGATTACTTACCACCCTGATTAA 1338 0.571 MLQSLVPRPPLNSNPNAMKTKRADRDRDDGDSPPEEASFKRPNSGEKTVVESEGREEEQAFEPESEGESSGLKLLGLLLQCAECVAMDNLNFANDLLPEIAELSTPFGTSPERVGAYFAQALQARVVSSCLGAYSPLTTKSVALTQSQRIFNAFQSYNSVSPLVKFSHFTANQVIFQALDGEDRVHIIDVDIMQGLQWPGLFHILASRSKKIRSMRITGFGSCSELLESTGRRLADFASSLGLPFEFHPVEGKIGSVTEVSQLGVRPNEAIVVHWMHHCLYDITGSDLGTLRLLTQLRPKLITTVEQDLSHAGSFLARFVEALHYYSALFDALGDGLSVDSLERHMVEQQLLGCEIRNIVAVGGPKRTGEVKVERWGDELRRVGFRPVSLRGNPAAQASLLLGMFPWKGYTLVEENGSLKLGWKDLSLLIASAWQPSDLITYHPD 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2273g00011 445 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 63 430 IPR005202 -
Gabi2273g00011 445 MobiDBLite consensus disorder prediction 1 18 - -
Gabi2273g00011 445 Pfam GRAS domain family 76 435 IPR005202 -
Gabi2273g00011 445 MobiDBLite consensus disorder prediction 19 56 - -
Gabi2273g00011 445 ProSiteProfiles GRAS family profile. 65 435 IPR005202 -
Gabi2273g00011 445 MobiDBLite consensus disorder prediction 1 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2273g00011 Gabi-Chr2273 115996 117846 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2273g00011 18 438 GRAS Transcription Factor Family AT5G41920 65.023 0.0 533
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gabi2273g00011 GRAS 4.1e-112 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2273g00011 - - gmx:100816249 758.059