Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2273g00010 ATGAATATAGTATCCATGGAAGACATCAACATGAATGGGGAAATTGCACTTCCAGGTTTTCGATTTCACCCAACTGAAGAAGAACTCCTCGATTTCTACCTTAAAAACATGGTTGTTGGCAAGAAACTACGTTACGACGTCATTGGTTTCCTCAACATCTATCATCATGATCCTTGGGACTTGCCTGGTCTGGCAAAAGTAGGGGAAAGAGAATGGTACTTCTTCGTGCCAAGGGACAAAAAACATGGCAGTGGAGGAAGGCCTAACCGCACCACTGAAAAAGGGTTCTGGAAAGCCACCGGTTCAGACCGGAAAATTGTGACCTTATCTGATCCCAAGCGCATCATTGGGTTAAGGAAGACCCTTGTTTTCTATGAGGGAAGAGCTCCTCGGGGATCCAAGACCGATTGGGTCATGAATGAGTACCGTTTACCTGACAATTGCCGATTACCAAAGGACATTGTGTTGTGCAAGATATACCGAAAGGCAACTTCGTTGAAAGTGCTGGAACAAAGGGCAGCAATGGAGGAAGAGATGAAGCAATTGGTTTGTTCACCTGCATCCCCTCCTTCCTCAACGGACACCATGTCCTTTAGCAGCCCACATGAAGAACAAAACGTGCACCTGCCCTTGTTGCAACAACATGTCATTCTTAAGAAAGAATCTGAAGCTGAAACTGAAGAGAGGGTATATATGTCCATGTCAGTGCCAAAGCAAGAAAAAACAAGGAACCAATTTTCTATGAAGGAGAACAAAACAACATGTGGTACATCCTTGCAATTGCCCTTGGGGAAGGACAAGCTGCCAGAGCTACAGCTGCCAATGGTCACGGACTGGACCCAAGATACATTTTGGGCTCAGTTGAACAGTCCATGGCTTCAAAACTTGACTCCTTCCAACATCTTAAACTTTTACTGA 918 0.4499 MNIVSMEDINMNGEIALPGFRFHPTEEELLDFYLKNMVVGKKLRYDVIGFLNIYHHDPWDLPGLAKVGEREWYFFVPRDKKHGSGGRPNRTTEKGFWKATGSDRKIVTLSDPKRIIGLRKTLVFYEGRAPRGSKTDWVMNEYRLPDNCRLPKDIVLCKIYRKATSLKVLEQRAAMEEEMKQLVCSPASPPSSTDTMSFSSPHEEQNVHLPLLQQHVILKKESEAETEERVYMSMSVPKQEKTRNQFSMKENKTTCGTSLQLPLGKDKLPELQLPMVTDWTQDTFWAQLNSPWLQNLTPSNILNFY 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2273g00010 305 Gene3D NAC domain 25 166 IPR036093 GO:0003677|GO:0006355
Gabi2273g00010 305 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 238 - -
Gabi2273g00010 305 FunFam NAC domain-containing protein 67-like 25 166 - -
Gabi2273g00010 305 ProSiteProfiles NAC domain profile. 16 162 IPR003441 GO:0003677|GO:0006355
Gabi2273g00010 305 SUPERFAMILY NAC domain 8 162 IPR036093 GO:0003677|GO:0006355
Gabi2273g00010 305 Pfam No apical meristem (NAM) protein 18 144 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2273g00010 Gabi-Chr2273 103511 105779 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2273g00010 11 305 NAC Transcription Factor Family AT2G17040 61.616 1.33e-121 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gabi2273g00010 NAM 2.6e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2273g00010 - - gmx:100816770 518.464