Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2273g00006 ATGGCTTTATTTCTTTGCTTCTTCATCTTCCTTCTTGCTTCATCTGCTTCTGCTTGCGATCGCTGCCTGCACCAATCCAAGGCTGCTTATTTCTCCAAAGCTTCTGCTCTTTCATCGGGGGCATGTGGGTATGGCTCTTTGGCACTGGGCTTAAGTGGTGGACACCTTGCAGCTGGTGTGTCTTCCCTATTCAAAGATGGAGCCGGTTGTGGTGCATGTTTTCAGATAAGATGCAAGAACCCAACTCTATGCACAAAAGCAGGTACAAGAGTGATATTGACTGATCTTAATGACAATAATCAAACTGACTTTGTCCTCAGCAGCAGAGCCTTCGCCGCCATGGCTCAGAAGGGTATGGGCCAACAAATTTTGAAGCTTGGCATTGTTGACATTGAATATAAGAGGGTACCTTGTGATTACAAAAATCAGAATTTGGCCGTCCGTGTAGAAGAATCAAGCAAAAAACCAGATTACTTAGCAATCAAATTTTTGTATCAAGGGGGTCAAACTGAGATAGTAGGTGTTGATGTAGCTCAGGTTGGATCTTCAAACTGGAGTTTCATGAGCAGAAACCATGGGGCTGTGTGGGACACAAGCAGGGTACCCCAAGGTGCATTGCAATTCCGGTTAGTGGTAACAGCAGGGTATGATGGTAAATGGATTTGGGCACAGAAGGTCCTACCTGCTGATTGGAAAAGTGGGGTGGTATATGACTCTGGCGTTCAGATAACAGACATTGCACAAGAGGGTTGTTCCCAGTGCGATGATGGAACCTGGTCATGA 783 0.4572 MALFLCFFIFLLASSASACDRCLHQSKAAYFSKASALSSGACGYGSLALGLSGGHLAAGVSSLFKDGAGCGACFQIRCKNPTLCTKAGTRVILTDLNDNNQTDFVLSSRAFAAMAQKGMGQQILKLGIVDIEYKRVPCDYKNQNLAVRVEESSKKPDYLAIKFLYQGGQTEIVGVDVAQVGSSNWSFMSRNHGAVWDTSRVPQGALQFRLVVTAGYDGKWIWAQKVLPADWKSGVVYDSGVQITDIAQEGCSQCDDGTWS 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2273g00006 260 PRINTS Major pollen allergen Lol pI signature 115 130 IPR005795 GO:0005576|GO:0019953
Gabi2273g00006 260 PRINTS Major pollen allergen Lol pI signature 215 232 IPR005795 GO:0005576|GO:0019953
Gabi2273g00006 260 PRINTS Major pollen allergen Lol pI signature 164 179 IPR005795 GO:0005576|GO:0019953
Gabi2273g00006 260 PRINTS Major pollen allergen Lol pI signature 148 163 IPR005795 GO:0005576|GO:0019953
Gabi2273g00006 260 PRINTS Major pollen allergen Lol pI signature 58 69 IPR005795 GO:0005576|GO:0019953
Gabi2273g00006 260 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 39 143 IPR007112 -
Gabi2273g00006 260 Pfam Expansin C-terminal domain 146 228 IPR007117 -
Gabi2273g00006 260 Gene3D - 12 139 IPR036908 -
Gabi2273g00006 260 PRINTS Expansin/Lol pI family signature 126 142 IPR007118 GO:0005576
Gabi2273g00006 260 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576
Gabi2273g00006 260 PRINTS Expansin/Lol pI family signature 185 199 IPR007118 GO:0005576
Gabi2273g00006 260 PRINTS Expansin/Lol pI family signature 38 56 IPR007118 GO:0005576
Gabi2273g00006 260 PRINTS Expansin/Lol pI family signature 225 239 IPR007118 GO:0005576
Gabi2273g00006 260 PANTHER EXPANSIN-B3 11 242 - -
Gabi2273g00006 260 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 157 239 IPR007117 -
Gabi2273g00006 260 Gene3D - 140 244 IPR036749 -
Gabi2273g00006 260 SUPERFAMILY Barwin-like endoglucanases 8 142 IPR036908 -
Gabi2273g00006 260 SUPERFAMILY PHL pollen allergen 144 239 IPR036749 -
Gabi2273g00006 260 SMART dpbb_1 57 133 IPR007112 -
Gabi2273g00006 260 Pfam Lytic transglycolase 57 133 IPR009009 -
Gabi2273g00006 260 FunFam Expansin-like A2 12 139 - -
Gabi2273g00006 260 FunFam Expansin-like A2 140 244 - -
Gabi2273g00006 260 CDD DPBB_EXLA_N 14 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2273g00006 Gabi-Chr2273 77281 79189 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2273g00006 16 260 Expansin Gene Family AT4G38400 70.040 2.83e-119 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2273g00006 - - gmx:100305884 432.18