Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2273g00002 ATGATCGACGATAGCTCTCCTAATGGGGATCGCCACCTTGCTCGACCAATCCTTGACTGCTTGAAGGAGGTACAATTTTCCTTTAGGGACACAAAGCCAGGGCTACGACTCCATTCCTCCAGGGATGTTAGCTGGCAGCCTCCTTTGACACTGTATCTTAAATTAAATACATATGAGGCCTCAAAGAGTCAAACGACTGAAGCAGCTTGTGAAGGGCTTCTTCGTGACCATATAGAAGTTTGGCTAGGGCGGTTTGCTGCAAGAATTGGACATTGTGCTGCTTTACAAGAAGAACTGTGGGGCTTTGAGCCAATATTACCTGATATACGTTTGGTTATGTATACCAAGTATGATTTTATTAAGGATCTTAATCCTTCTAAGGAGGAGTGGAGGATTAAGGCTAGAGTTGTTAGAACATGGAAGGTTCCTAATTTTCAGCAAATTTTTTTTGACGACAACGTAAAGATGATTCTGTTAGATGAAAAGGGTGGAAGGGTCCACGCTGCTATCAAGGGTTCTTTAAATATCCGTAACAAAATTCATGAAGAAGTTTATTTCATAAAATTTTTTGGAGTTGGTTTGAATAGTGGGAGTTTTAGGCCAACTAAGCATGATTATCGTTTGTCCTTCAACTTGAGGACTGATGTAAAATCCACTATTGATTCTGCTATTCCCACCAATGGATTTGATTTTGTAGATTTTGACGTTATAGAGAAAGAGTCTTCTGATTCCCCTTATTTAGTAGATGTCATCGGTTTAGTTTCTGGAATAGGGGAAGTTCGTGAGCATATTATCTCCGGTAGGAAGACAAAAATGGTTGTCGTGGAGCTTGATAACCTCAGGCTTTCGTCTGATGTCATTGATAGCGGTTACACGTTGTCTCAGTTATCAAGTCAGTCCTCATATTCTTTTGAGAATGATTTCCTGAAAGAGACGGAAAGGAAGTGTATCAGTGATGTTAAGAATTGCAGTGAGGTTACTACTTGCATTACTTATGGAACCATAAAATCGATTGAGAGCAAATATAAATGGTGGTACAAGTCCTGTAATAAATGTCCATATTCTGTTTATGAAGATTTCGAGAAATGGTATTGTAAAAACTGCCAAAAACATTTTGATGATTATTATCCAAAATTTTGTGTGCAGTTGAGAGTTGTGGATCACACTGATTCTGCATCTTTCATTCTGTTTGATAGAGACTGTGTTGCTTTGTTGGGCATGAGTGCTGCGGATTTACGTGAGCAGCATTTCAAAAGGGGTGATGATTTCGAGCACTATCCTAAGGAACTTAATGTTCTTATTGATAAATCCATGTTGTTTAAAGTGAATGTGAAAAAAAATAATTTGGACTCATACAGTGAGCCTAGGTATCAGATTTCTAAAGTATGTATAAGCGAACCTGTAATCACATCCTTCCTTAAGACTGTTGTGGATACGAATGATGAAGGATTATTTGACAAGGCTTGCGACAGTGTCGTTGCATCAGCAGAACCGGAAAGAGCTACGGGTTGTACAAGTTATGAAGATTTGAGAACGGTCAATGGGGTGCTTTTTCCTACATATAAGGATGCCTGTTATTCTTTGGGGCTTTTGGATGATGACAATGAGTACATTGATGCAATTAAGGAGGCAAGTTCTTGGGGGCCTGAAAATGTTTTCCAAAAATGCTGGGAATTACTATCTGACGATGTTCTTTATCGGCATAGGCAAAGAATTGGACGTGAAGATGCTTTGCTTACAGAGGATTCTATAAAAAACATAACCCTGGCAGAAATCGATAAGGTGTTGCAAAGCAACGGTAAATGCTTCTCTGATTACCCATCCATGCCGAGCATCATGGGTGAATCTTTATTGGATATGCAGAATAGATTGGTGATGGATGAATTGTTGTATGACAATTTCTCTTTGAAAGAAGAGCATGACAGACTACTGAATTCACTCACTGATGAGCAAAGGGTTGTTTATGACAAAATAATTTCAGCTGTTTCGACAGGTAAAGGAGGATTTTTTTTCCTGTACGGCTTTGGTGGGACTGGAAAAACATTTATTTGGAACACCCTGTCAGCATTTGTTCGATCTCGAGCTGAAATAGTGCTTAATGTTGCTTCTAGCGGAATTGCTTCTAGCGGAATTGCTTCACTTCTTCTTCCTGGAGGACGTACGACACATTCTAGATTTCGTATTCCTATACAGATCACCGAAGATTCAACATGTAATATAAAACAAAATTCTACTTTAGCAGAGTTGTTGTCAAAAACAAAGTTAATCATTTGGGATGAAGCACCGATGGTACACAAATTTTGCTTTGAGGCTCTTGATAGAACACTTAGAGATGTTCTTAGCTGTGTTGATATGCCCTTTGGTGGAAAAGTTGTCGTTCTAGGAGGTGACTTTCGGCAAATATTACCTGTCATTCCAAATGGCAGTAGACAAGATATAGTTCATGCAACCATCAATTCTTCCTATTTGTGGTCCCATTGTCATCTGTTATCTTTGACCAAGAACATGCGTCTCAATTCTGGAAGTAGCACTAATAATTTGTTGGAAATAAAAGAATTTTCTGAGTGGTTGCTCAAAATAGGAGATGGTGATCTTGGGGATGATGTTGATGGAGAATCTATTATAACAATTCCGGATGAATTGTTGATCAAAGGTTCAGAATACCCACTTTCAGATATTGTTGATTTTGTTTACCCGAATCTGATGGATAATATATTAGATCCTACTTTCTTTAAAGAACGTGCTCTTCTGATTCCTAAATTGTCCGATGTTGCCATGTTAAACGAGCACCTAATGGCTGTGATTCCGGGTGAAGAAAGGACATTATTGAGTTCAGATAAGGTTTTGAAACAAGACGGTAATTCATCTCTTGAGGATGACGAAATCTCCCCTGATATCTTAAATACATTCTCATGTTCGGGGATTCTTGATCATAAATTAACTTTGAAGGTTAAAGTACCGATGATGCTATTGAGAAATATTGATCAATCAAGAGGTTTATGCAATGGTACGAGATTACTTATTACAAAGTTGGGGAATCATGTTGTTGAGGCAATTGTTCTTACAGGAAACAATATAGGAGATACTGTGTTAATCCCTAGAATGACGATCAGCCCATCGGGTCATACATTTCCAGTAAACTTCAAAAGAAGACAATTCCCCTTGGTAGTTTCGTTTGCGATGACTATCAACAGAAGTCAAGGACAGTCGCTGTCTCATGTTGGCATTTATCTTCCTAGGTCTGTCTTCACTCATGGGCAATTATATGTGGCACTATCTAGAGTAAAGAGCATACATTGA 3300 0.3861 MIDDSSPNGDRHLARPILDCLKEVQFSFRDTKPGLRLHSSRDVSWQPPLTLYLKLNTYEASKSQTTEAACEGLLRDHIEVWLGRFAARIGHCAALQEELWGFEPILPDIRLVMYTKYDFIKDLNPSKEEWRIKARVVRTWKVPNFQQIFFDDNVKMILLDEKGGRVHAAIKGSLNIRNKIHEEVYFIKFFGVGLNSGSFRPTKHDYRLSFNLRTDVKSTIDSAIPTNGFDFVDFDVIEKESSDSPYLVDVIGLVSGIGEVREHIISGRKTKMVVVELDNLRLSSDVIDSGYTLSQLSSQSSYSFENDFLKETERKCISDVKNCSEVTTCITYGTIKSIESKYKWWYKSCNKCPYSVYEDFEKWYCKNCQKHFDDYYPKFCVQLRVVDHTDSASFILFDRDCVALLGMSAADLREQHFKRGDDFEHYPKELNVLIDKSMLFKVNVKKNNLDSYSEPRYQISKVCISEPVITSFLKTVVDTNDEGLFDKACDSVVASAEPERATGCTSYEDLRTVNGVLFPTYKDACYSLGLLDDDNEYIDAIKEASSWGPENVFQKCWELLSDDVLYRHRQRIGREDALLTEDSIKNITLAEIDKVLQSNGKCFSDYPSMPSIMGESLLDMQNRLVMDELLYDNFSLKEEHDRLLNSLTDEQRVVYDKIISAVSTGKGGFFFLYGFGGTGKTFIWNTLSAFVRSRAEIVLNVASSGIASSGIASLLLPGGRTTHSRFRIPIQITEDSTCNIKQNSTLAELLSKTKLIIWDEAPMVHKFCFEALDRTLRDVLSCVDMPFGGKVVVLGGDFRQILPVIPNGSRQDIVHATINSSYLWSHCHLLSLTKNMRLNSGSSTNNLLEIKEFSEWLLKIGDGDLGDDVDGESIITIPDELLIKGSEYPLSDIVDFVYPNLMDNILDPTFFKERALLIPKLSDVAMLNEHLMAVIPGEERTLLSSDKVLKQDGNSSLEDDEISPDILNTFSCSGILDHKLTLKVKVPMMLLRNIDQSRGLCNGTRLLITKLGNHVVEAIVLTGNNIGDTVLIPRMTISPSGHTFPVNFKRRQFPLVVSFAMTINRSQGQSLSHVGIYLPRSVFTHGQLYVALSRVKSIH 1099
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2273g00002 1099 Gene3D - 643 829 IPR027417 -
Gabi2273g00002 1099 PANTHER UNCHARACTERIZED 501 1097 - -
Gabi2273g00002 1099 CDD RPA1_DBD_A_like 131 216 - -
Gabi2273g00002 1099 Pfam PIF1-like helicase 647 1011 IPR010285 GO:0000723|GO:0003678|GO:0006281
Gabi2273g00002 1099 Gene3D - 299 468 IPR012340 -
Gabi2273g00002 1099 CDD SF1_C_RecD 1058 1097 - -
Gabi2273g00002 1099 Pfam Domain of unknown function DUF223 156 244 IPR003871 -
Gabi2273g00002 1099 Pfam Replication factor-A C terminal domain 331 462 IPR013955 -
Gabi2273g00002 1099 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 585 837 IPR027417 -
Gabi2273g00002 1099 Gene3D - 119 221 IPR012340 -
Gabi2273g00002 1099 SUPERFAMILY Nucleic acid-binding proteins 117 221 IPR012340 -
Gabi2273g00002 1099 Gene3D - 223 290 IPR012340 -
Gabi2273g00002 1099 SUPERFAMILY Nucleic acid-binding proteins 312 462 IPR012340 -
Gabi2273g00002 1099 CDD RPA1_DBD_C 317 462 IPR047192 -
Gabi2273g00002 1099 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 783 1097 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2273g00002 Gabi-Chr2273 13790 24822 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2273g00002 107 462 Core DNA Replication Machinery Family AT5G08020 20.767 4.70e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2273g00002 - - egt:105961772 694.115