Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2273g00001 ATGCTGTTGCCGTGTGACTACTGCGATTCGAAAAGCGCGGTTCTGTTCTGCAAAGCTGACTCGGCGAAGCTCTGTTTGGTGTGTGACCAGCACGTTCACTCTGCAAACGCGCTTTCCCTTAAGCACCTCCGTTACCAGATTTGCGACACGTGTAAATCCGACACCGCCGCCGTTCGTTGCTCCACCGACAACCTCGTTCTCTGCAGCCGCTGCGACTGGGACGTCCACTCCTCGGTCGCGCTGCCGCTCCACCACCACGACCGCCACCCCGTCGAGGCACTCTCCGGCTGCCCTTCCGTTCTCGAGATTGCGTCCTCGCTGGGCTTCGATCTCAGGCCCAACGAATCGGCCCATGAGCTCGATGTCCCTGTGGTCCCCACCGTTTCGTTATCAAAGGGTCAGAGTTTGTATTGCGGGAAATATAGGGATGAGGTGTACGAGCAGGTTGTGGAAATCGCAAGGAAAAGGAACCTCAATGTGCAGGGTGCTGTAGAGAGTGATGAATTCAAATTCAATAATAATAATAATAATAATAATTATGGGAAGGAAAATGATGTTGATGAGTTGTTGCTGCATCAAACACCGTTTAGGTCTTTGCTCATGTTGCCATCTGAATCTGATGTTGACACGAAGAAAAACAACGATTACGGAACCGAAGCAGGGGATCTTCTCTGGAATTGTTGTAATCCCGCATATCAGGCTCCTCAGGTTTGGGATTTTCAATTGCAGAAATCAAGAGATTGTGGTGAACCAAGAACGGTGACATTTGATGGCAGAGAAGAAGCTTCTTCCCTATTGATTCCAAAAACATTGCAAGATGTGCAAAATATGAATTGCTCAACGATTGGTGATGATATACTATCAAGAAATAATCAATCGGATCAGTCATCATCAAGCCATGTGAAGGAGAAAGAGGAAAGCAACAAGAAAGCAAGAGGTGGATTATCGTCAGAGTCCAAATTGACTGAATCCATAACATACAGTGGCACCAACAAGGTCGCAACAGTGGAGCATTTTGTGAGTGGGAGTGAAAATGTTAGCTTCATAAAAGCCAAGGTTAACTTGGAAGAGCTAGCAAAGAATAGAGGGGATGCCATGTTACGCTACAAGGAGAAGAAGAAAACTCGAAGGTACGATAAGCACATTCGGTATGAATCAAGGAAGGCTAGGGCTGATACGAGAAAGCGGGTGAGAGGGCGATTTGTAAAGGCAAGTGATACAACTGATGTTCCAGCATGA 1239 0.473 MLLPCDYCDSKSAVLFCKADSAKLCLVCDQHVHSANALSLKHLRYQICDTCKSDTAAVRCSTDNLVLCSRCDWDVHSSVALPLHHHDRHPVEALSGCPSVLEIASSLGFDLRPNESAHELDVPVVPTVSLSKGQSLYCGKYRDEVYEQVVEIARKRNLNVQGAVESDEFKFNNNNNNNNYGKENDVDELLLHQTPFRSLLMLPSESDVDTKKNNDYGTEAGDLLWNCCNPAYQAPQVWDFQLQKSRDCGEPRTVTFDGREEASSLLIPKTLQDVQNMNCSTIGDDILSRNNQSDQSSSSHVKEKEESNKKARGGLSSESKLTESITYSGTNKVATVEHFVSGSENVSFIKAKVNLEELAKNRGDAMLRYKEKKKTRRYDKHIRYESRKARADTRKRVRGRFVKASDTTDVPA 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2273g00001 412 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Gabi2273g00001 412 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 4 406 - -
Gabi2273g00001 412 MobiDBLite consensus disorder prediction 282 297 - -
Gabi2273g00001 412 Pfam CCT motif 362 404 IPR010402 GO:0005515
Gabi2273g00001 412 SMART bboxneu5 1 47 IPR000315 GO:0008270
Gabi2273g00001 412 ProSiteProfiles CCT domain profile. 362 404 IPR010402 GO:0005515
Gabi2273g00001 412 CDD Bbox1_BBX-like 4 47 - -
Gabi2273g00001 412 MobiDBLite consensus disorder prediction 298 313 - -
Gabi2273g00001 412 MobiDBLite consensus disorder prediction 282 320 - -
Gabi2273g00001 412 ProSiteProfiles Zinc finger B-box type profile. 43 91 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2273g00001 Gabi-Chr2273 9837 12433 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2273g00001 3 406 C2C2-CO-like Transcription Factor Family AT1G28050 37.162 1.48e-74 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Gabi2273g00001 CCT 9.6e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2273g00001 - - aprc:113862926 551.977