Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2271g00004 ATGACTATATATAGAAGTGCAGAAGACTTGCACAGCAAGCTAAGTAGTCTGAAAGGATTACTCTTGCGGGGTGGAAACATTCTAGAGAAGTTTGCCATGGTAAACACAGTTGTGTTCGATAAAACAGGGACCCTTACAGTTGGTAGACCTGTGGTGACAAAGATTGTCACTCCTACATGCATAGAAAATGCAAATCCAAGCCAAACTGAAGAAAATGCTTTGTCTGATGTTGAAGTTCTGAGGTTAGCAGCTGGGGTAGAATCAAATTCGGTACATCCAGTTGGGAGAGCGATTGTAGATGCTGCTCAGGCAGTTAATTGTCATAATGCTAAGGTAGCAGATGGAACATTCCTGGAAGAACCTGGATCTGGTGCAGTAGCAACCATTGATAATAAAAAGGTTTCTGTTGGGACATTGGAATGGATTACCAGGTGTGGAGTTAACAACAGTATACATCAAGAAATGGATGAGTGTAAAAACCAATCCTTTGTCTATGTTGGGGTCAATGAGACTCTAGCTGGCCTAATTTATTTTGAAGATGAGATAAGGGAAGATGCAAGACACGTTATTGACACATTGTCTAAGCAAGATATTGGTGTATACATGCTGTCTGGAGACAAAAGGAATGCGGCTGAGTATGTTGCATCCCATGTTGGAATTCCCAAAGAGAAGGTGATATCTGAAGTGAAACCAGACGAGAAAAAGAAGTTCATAAATGAACTACAGAAAGATAATAACATTATAGCTATGGTTGGTGATGGAATTAATGATGCAGCTGCTCTGGCTTCTTCACATATTGGTATTGCACTAGGTGGAGGTGTTGGAGCTGCCAGTGAGGTATCTTCTATTGTATTGATGCGCAACCAGCTCTCACAGCTACTAGATGCTTTGGAGCTTAGCAGGCTAACCATGAATACCGTGAAACAAAATCTTTGGTGGGCTTTCATATACAACATTGTAGGGATTCCAATCGCAGCTGGAGTTTTATTTCCTATAAATGGGACTATGCTGACTCCATCAATTGCAGGGGCTCTCATGGGTTTCAGTTCCATTGGCGTAATGACTAACTCGTTACTTTTGAGATTCAAATTTTCCTCAAAGCAG 1104 0.4121 MTIYRSAEDLHSKLSSLKGLLLRGGNILEKFAMVNTVVFDKTGTLTVGRPVVTKIVTPTCIENANPSQTEENALSDVEVLRLAAGVESNSVHPVGRAIVDAAQAVNCHNAKVADGTFLEEPGSGAVATIDNKKVSVGTLEWITRCGVNNSIHQEMDECKNQSFVYVGVNETLAGLIYFEDEIREDARHVIDTLSKQDIGVYMLSGDKRNAAEYVASHVGIPKEKVISEVKPDEKKKFINELQKDNNIIAMVGDGINDAAALASSHIGIALGGGVGAASEVSSIVLMRNQLSQLLDALELSRLTMNTVKQNLWWAFIYNIVGIPIAAGVLFPINGTMLTPSIAGALMGFSSIGVMTNSLLLRFKFSSKQ 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2271g00004 368 SFLD p-type atpase 21 301 IPR044492 -
Gabi2271g00004 368 FunFam Copper-transporting ATPase PAA1 chloroplastic 49 182 - -
Gabi2271g00004 368 PRINTS H+-transporting ATPase (proton pump) signature 282 307 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi2271g00004 368 PRINTS H+-transporting ATPase (proton pump) signature 251 267 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi2271g00004 368 FunFam Copper-transporting ATPase PAA1 chloroplastic 167 318 - -
Gabi2271g00004 368 Gene3D - 49 182 IPR023299 GO:0000166
Gabi2271g00004 368 PRINTS P-type cation-transporting ATPase superfamily signature 38 52 - -
Gabi2271g00004 368 PRINTS P-type cation-transporting ATPase superfamily signature 174 185 - -
Gabi2271g00004 368 PRINTS P-type cation-transporting ATPase superfamily signature 251 270 - -
Gabi2271g00004 368 PRINTS P-type cation-transporting ATPase superfamily signature 274 286 - -
Gabi2271g00004 368 PRINTS P-type cation-transporting ATPase superfamily signature 196 206 - -
Gabi2271g00004 368 SUPERFAMILY HAD-like 36 358 IPR036412 -
Gabi2271g00004 368 Pfam haloacid dehalogenase-like hydrolase 34 263 - -
Gabi2271g00004 368 PANTHER ATP7, ISOFORM B 16 362 - -
Gabi2271g00004 368 ProSitePatterns E1-E2 ATPases phosphorylation site. 40 46 IPR018303 -
Gabi2271g00004 368 Gene3D - 29 301 IPR023214 -
Gabi2271g00004 368 NCBIfam HAD-IC family P-type ATPase 80 332 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi2271g00004 368 SFLD Haloacid Dehalogenase 21 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2271g00004 Gabi-Chr2271 12899 32184 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2271g00004 18 361 Primary Pumps ATPases AT1G63440 36.467 8.60e-61 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2271g00004 K17686 - gmx:100796210 596.66