Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2271g00001 ATGGCGGAGCTATGGGGGTCCCTCATTGGGTTGGAGATAGCCTGGCCTTACGGGATGAGGAACATTTGTCTTGAAGGAGACTCGGTTACTGCTATTGGCCTCATTAGGTCTAGAGCTGATAGGAATAAACCCTTTTACAACCTTGTCAACAAAATTCGGAAGCTTATATGGAGGGACTGGGTGGTGATGATCTCTCACGTCCACAGAGAGGGAAACCAAGTTGCTGATAAACTCGCGAATATGGCTTTTAGTCAAGGTAGGGGAGTGCAGTGCAGCCAAACTGAAGAAAATGCTTTGTCTGATGTTGAAGTTCTGAGGTTAGCAGCTGGGGTAGAATCAAATTCGGTACATCCAGTTGGGAGAGCGATTGTAGATGCTGCTCAGGCAGTTAATTGTCATAATGCTAAGGTAGCAGATGGAACATTCCTGGAAGAACCTGGATCTGGTGCAGTAGCAACCATTGATAATAAAAAGGTTTCTGTTGGGACATTGGAATGGATTACCAGGTGTGGAGTTAACAACAGTATACATCAAGAAATGGATGAGTGTAAAAACCAATCCTTTGTCTATGTTGGGGTCAATGAGACTCTAGCTGGCCTAATTTATTTTGAAGATGAGATAAGGGAAGATGCAAGACACGTTATTGACACATTGTCTAAGCAAGATATTGGTGTATACATGCTGTCTGGAGACAAAAGGAATGCGGCTGAGTATGTTGCATCCCATGTTGGAATTCCCAAAGAGAAGGTGATATCTGAAGTGAAACCAGACGAGAAAAAGAAGTTCATAAATGAACTACAGAAAGATAATAACATTATAGCTATGGTTGGTGATGGAATTAATGATGCAGCTGCTCTGGCTTCTTCACATATTGGTATTGCACTAGGTGGAGGTGTTGGAGCTGCCAGTGAGGTATCTTCTATTGTATTGATGCGCAACCAGCTCTCACAGCTACTAGATGCTTTGGAGCTTAGCAGGCTAACCATGAATACCGTGAAACAAAATCTTTGGTGGGCTTTCATATACAACATTGTAGGGATTCCAATCGCAGCTGGAGTTTTATTTCCTATAAATGGGACTATGCTGACTCCATCAATTGCAGGGGCTCTCATGGGTTTCAGTTCCATTGGCGTAATGACTAACTCGTTACTTTTGAGATTCAAATTTTCCTCAAAGCAGAAACAAATACGTGGCACATTGCCAAAGAAGACCAAAATTCGTGTGGATTCTGGTCTGGCACACCAAAACCAGAAAATAAAGTATCCATATTAG 1272 0.4253 MAELWGSLIGLEIAWPYGMRNICLEGDSVTAIGLIRSRADRNKPFYNLVNKIRKLIWRDWVVMISHVHREGNQVADKLANMAFSQGRGVQCSQTEENALSDVEVLRLAAGVESNSVHPVGRAIVDAAQAVNCHNAKVADGTFLEEPGSGAVATIDNKKVSVGTLEWITRCGVNNSIHQEMDECKNQSFVYVGVNETLAGLIYFEDEIREDARHVIDTLSKQDIGVYMLSGDKRNAAEYVASHVGIPKEKVISEVKPDEKKKFINELQKDNNIIAMVGDGINDAAALASSHIGIALGGGVGAASEVSSIVLMRNQLSQLLDALELSRLTMNTVKQNLWWAFIYNIVGIPIAAGVLFPINGTMLTPSIAGALMGFSSIGVMTNSLLLRFKFSSKQKQIRGTLPKKTKIRVDSGLAHQNQKIKYPY 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2271g00001 423 CDD RNase_H_like 1 80 IPR044730 -
Gabi2271g00001 423 Pfam Reverse transcriptase-like 1 82 IPR002156 GO:0003676|GO:0004523
Gabi2271g00001 423 Gene3D - 92 182 IPR023299 GO:0000166
Gabi2271g00001 423 PANTHER ATP7, ISOFORM B 91 387 - -
Gabi2271g00001 423 NCBIfam HAD-IC family P-type ATPase 106 357 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi2271g00001 423 PRINTS P-type cation-transporting ATPase superfamily signature 299 311 - -
Gabi2271g00001 423 PRINTS P-type cation-transporting ATPase superfamily signature 276 295 - -
Gabi2271g00001 423 PRINTS P-type cation-transporting ATPase superfamily signature 221 231 - -
Gabi2271g00001 423 PRINTS P-type cation-transporting ATPase superfamily signature 199 210 - -
Gabi2271g00001 423 FunFam Copper-transporting ATPase PAA1 chloroplastic 192 343 - -
Gabi2271g00001 423 SUPERFAMILY HAD-like 177 383 IPR036412 -
Gabi2271g00001 423 Gene3D - 189 343 IPR023214 -
Gabi2271g00001 423 SUPERFAMILY Ribonuclease H-like 2 85 IPR012337 -
Gabi2271g00001 423 PRINTS H+-transporting ATPase (proton pump) signature 276 292 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi2271g00001 423 PRINTS H+-transporting ATPase (proton pump) signature 307 332 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi2271g00001 423 FunFam Copper-transporting ATPase PAA1 chloroplastic 77 207 - -
Gabi2271g00001 423 Pfam haloacid dehalogenase-like hydrolase 99 288 - -
Gabi2271g00001 423 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 99 209 IPR023299 GO:0000166
Gabi2271g00001 423 Gene3D - 1 84 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2271g00001 Gabi-Chr2271 828 6809 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2271g00001 103 386 Primary Pumps ATPases AT1G63440 36.082 1.92e-48 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2271g00001 K17686 - gmx:100796210 550.436