Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2260g00001 ATGGGGGATGCCTATTTCTCCAATGATCACCTGCCTAGAACTTCTGAACAAACAGAGGATGGTGATTGCCTCTCTGCAATGTTACTCACTACTAATCTTGTGTATCCTGCAGTCCTCAATGCTGCTATTGAACTCAACTTGTTTGATATCATAGCTAAGGCAACAACCACACACTGTGCTGATGGTGATGGTGTTGGTGTTGGTGTTGATGCCTTCATCTCACCCTCTGAAATTGCTTCTAAACTCCCAACACAACACTCTGACTTGCCTAATAGGCTTGACCGCATGCTTCGTTTGCTTTCGAGTTATTCTCTTCTTATTTGTTCCACTCGCACCACTCTTCATGGTTCCTCTGAGAGAGTTTATGCTCTCTCTCCAGTTGGTAAATACTTAGTCTCTGATGAAACCAGGGGCTACTTGGCTTCCTTCACTACATTTCTCTGTTATCCTGCTCTCTTACAAGTTTGGCTGAACTTCAAGGAAGCTGTGGTTGATGAGAACATTGACCTGTTCAAGAAACTTCATGGAATAACAAAGTACGAGTACATGGAAAAGGATCCTAAAATGAACCACATCTTTAACAAGTCAATGTCAGATGTGTGTGCAACGGAGATGAAAAGAATGCTTGAAATATATAATGGATTTGAGGGAATATCAACATTGGTTGACGTTGGTGGTGGAAATGGACAAAATCTCAAAATGATAATCTCAAAGTATCCTTTAATTAAGGGAATTAATTTTGATCTGCCACAAGTGATTGAACATGCACCACCCATTCCAGGGATTGAGCACGTTGGAGGAGATATGTTTGCGACTGTTCCGCGGGGTGATGCCATAATACTAAAGGCTGTATGCCACAACTGGTCAGATGAAAAATGCATAGAATTTTTAAGCAATTGTCACAAAGCATTGTCACCAAATGGGAAGGTGATTGTTGTGGAGTTCATATTGCCAGAAGAACCAGAACAAACTGATGAATCCAAGCTTGTTTCCACTCTGGACAACCTCATGTTTATTACAGTTGGTGGAAGGGAAAGAACTCAGAAACAATATGAGAACTTGTGCAAGCTCTCCGGATTTTCAAAATTTCATGTGGCTTGTCGCGCTTTCTCTGCTTTAGGAGTGATGGAGTTTTACAAATAA 1143 0.4121 MGDAYFSNDHLPRTSEQTEDGDCLSAMLLTTNLVYPAVLNAAIELNLFDIIAKATTTHCADGDGVGVGVDAFISPSEIASKLPTQHSDLPNRLDRMLRLLSSYSLLICSTRTTLHGSSERVYALSPVGKYLVSDETRGYLASFTTFLCYPALLQVWLNFKEAVVDENIDLFKKLHGITKYEYMEKDPKMNHIFNKSMSDVCATEMKRMLEIYNGFEGISTLVDVGGGNGQNLKMIISKYPLIKGINFDLPQVIEHAPPIPGIEHVGGDMFATVPRGDAIILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIVVEFILPEEPEQTDESKLVSTLDNLMFITVGGRERTQKQYENLCKLSGFSKFHVACRAFSALGVMEFYK 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2260g00001 380 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 27 380 IPR016461 GO:0008168
Gabi2260g00001 380 Pfam O-methyltransferase domain 156 361 IPR001077 GO:0008171
Gabi2260g00001 380 FunFam Caffeic acid 3-O-methyltransferase 6 131 - -
Gabi2260g00001 380 Pfam Dimerisation domain 38 101 IPR012967 GO:0046983
Gabi2260g00001 380 Gene3D Vaccinia Virus protein VP39 190 369 IPR029063 -
Gabi2260g00001 380 CDD AdoMet_MTases 220 317 - -
Gabi2260g00001 380 SUPERFAMILY "Winged helix" DNA-binding domain 21 135 IPR036390 -
Gabi2260g00001 380 PIRSF O-mtase 5 380 IPR016461 GO:0008168
Gabi2260g00001 380 Gene3D - 32 168 IPR036388 -
Gabi2260g00001 380 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 139 376 IPR029063 -
Gabi2260g00001 380 FunFam Caffeic acid O-methyltransferase 134 380 - -
Gabi2260g00001 380 Gene3D - 172 208 IPR036388 -
Gabi2260g00001 380 PANTHER O-METHYLTRANSFERASE 26 370 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2260g00001 Gabi-Chr2260 11102 12639 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2260g00001 16 380 Monolignol Biosynthesis Gene Families AT5G54160 46.448 3.59e-112 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2260g00001 - - gmx:100787536 587.415