Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2257g00002 ATGAGGTTGGGGTGTGATCTCTTGCAACACTGCTTCACTAGCTCTTCTTCTGATACATTTCCAAAGGATGAAAAGTTGAAGTGGCAAATCTTCCACTATAACGAACTTGCCAAAGCCACAAACAATTTTGATCGATGTAATTGTCGTGGATGGGGAGACTTGGACACAGTATATTATGGCAAACTTGACAATGGATTAGAGATTGCAATTCAACGCTTTCATGAAGAAAAGCGCCAAACATTTCAACAGTTCATCAATGAAAATATGATCCTAAATTACTTGCCCCACAAAAATCTTGTGACGATTTATGGGCGCACCTCTGATGAGGAATCCATGCTAGTACATGAATACCTCTCCAATGGCACTCTTGCTGGTCATCTTCAATGTGAAATTGCAGAAAGCAGCACGTTACCTTGGCTTACCCGATTGGATATTGCCATTGATACTGCAAAAGCATTGGTCTATCTTCACTCTCATGGCATCATCCACTCTGATATAACTTCAAGCAATATTCTCCTAGATAAGAACTTTTGTGCTAAAATTTCTAACTTTCTATTATCAAGGAAACATCCAGAGGGAGTTTCTGCCAATGCTACTACACATGTTGCAAGTGATATAATAGGAACATGTGGTTATATAGATCCGGAGTATCAGCAACATGGCTGTCTTAGCGTACAAAATGATGTGTATAGTTTTGGGGTGGTGTTGATTGAACTTATATCATCAAAGCTTGTTAATTATTGGGAAGGGAGTGACGATGATAGCTTTGCTACTATTGTAAGCAGAAAAATCCAAAACCAATCATTGGAGGAGCTAGTGGATCCAAGACTTGGCTTCCAATCAGACCATATCATCAAGAAGACAATAATTGCTGTAGCAGAGCTTGCAACTCGTTGCTTGCAATGTCCACTAGAGCTAAGGCCATACATGGTACAGGTGCTAGGAACTCTCCAGTCTGCTTGTGTTGATGATGATATTGTAGATTCCATTGAAGACTTGACATTGAATAAAAAGGGTGATAGCACTAAGAAAAAAACAAGCAATGACACTGATCAAAGTAAGCAATCAAGTGAGCAACAAGATATTCCTAATGTTTCAAATTCTTCAACCTTGCTGAACTTAAAGAAGCCACTGGCGGTTTTAACACTAGTCTTGGAGAGGGTGGGTATGGCACTGTATATTATGGTAAAAAGCTGA 1197 0.3943 MRLGCDLLQHCFTSSSSDTFPKDEKLKWQIFHYNELAKATNNFDRCNCRGWGDLDTVYYGKLDNGLEIAIQRFHEEKRQTFQQFINENMILNYLPHKNLVTIYGRTSDEESMLVHEYLSNGTLAGHLQCEIAESSTLPWLTRLDIAIDTAKALVYLHSHGIIHSDITSSNILLDKNFCAKISNFLLSRKHPEGVSANATTHVASDIIGTCGYIDPEYQQHGCLSVQNDVYSFGVVLIELISSKLVNYWEGSDDDSFATIVSRKIQNQSLEELVDPRLGFQSDHIIKKTIIAVAELATRCLQCPLELRPYMVQVLGTLQSACVDDDIVDSIEDLTLNKKGDSTKKKTSNDTDQSKQSSEQQDIPNVSNSSTLLNLKKPLAVLTLVLERVGMALYIMVKS 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2257g00002 398 Gene3D Phosphorylase Kinase; domain 1 14 117 - -
Gabi2257g00002 398 SUPERFAMILY Protein kinase-like (PK-like) 28 328 IPR011009 -
Gabi2257g00002 398 MobiDBLite consensus disorder prediction 338 364 - -
Gabi2257g00002 398 ProSiteProfiles Protein kinase domain profile. 43 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2257g00002 398 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 20 352 IPR044652 GO:0004672
Gabi2257g00002 398 ProSitePatterns Tyrosine protein kinases specific active-site signature. 161 173 IPR008266 GO:0004672|GO:0006468
Gabi2257g00002 398 Pfam Protein tyrosine and serine/threonine kinase 52 261 IPR001245 GO:0004672|GO:0006468
Gabi2257g00002 398 Gene3D Transferase(Phosphotransferase) domain 1 118 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2257g00002 Gabi-Chr2257 14539 16079 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2257g00002 26 319 Receptor kinase-like Gene Family AT1G25390 44.966 1.51e-72 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Gabi2257g00002 PK_Tyr_Ser-Thr 1e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2257g00002 - - gsj:114418636 400.593