Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2257g00001 ATGTTAATCCCAACAATTTCAACATATATTTCTTCTTATGACATGCTCTTGTGTTTAGGAAAACTTAGAGATGGGCGTAAGGTTGCAGTTAAACGTTTCCATGAAAAGAGTGACAAGACCGTGAAGCAATTCATGAATGAAATTAACATGCTAAGTCTCTTGCAGCATCAAAACCTCGTTTCATTCTATGGATGCACTCATCTAGACAGCAATGAATACCTGCTAGTGTACGAGTATGTCTCAGGTGGCACTCTTTCTAAGCATCTTGATGCAATTTCTGGCAGCAAACTAGCATGGCATACCAGATTGAATATTGCCATTGAGACTGCAACTTCATTGGTATTTCTTCACAATTCAGGTATCATCCACCGTGATGTAAAAGCAAGCAACATTCTGTTGGAAGAGAGTTTTAGAGTTAAAGTGGCAGATTTTGGACTCTCAAGATATTTTCCAGATTTTGTTACTCATGTTTCAACTGTTCCAGTAGGAACTCATGCTTACATAGATCCAGATTATTATCAATCTGGCAGAGTTAGTGACAAAAGTGATGTCTATAGCTTTGGGGTGGTCTTGTTTCAGCTTATATCATCCAAATGCCCAAGTGTCAAGGAGGGAAACGAGTTTGTCACTCTTGCTCACTTTGCAATGAATAAAATCATAAACAAGGCATTGGAGGAGCTCGTGGATCCAAGTCTTGGGTTTGATTCAGACAAAAACATAATGGAAATGATAACAGCTGTGGCAGAGTTAGCATTTCAGTGCGTGCAGTGTCCCAAGGAACTAAGACCATCTATGAAACAGGTGCTAGAGATCCTCAAGGGCATAAGGAAGGGAACATGGGGATTCAACCAGATAACATAG 861 0.3984 MLIPTISTYISSYDMLLCLGKLRDGRKVAVKRFHEKSDKTVKQFMNEINMLSLLQHQNLVSFYGCTHLDSNEYLLVYEYVSGGTLSKHLDAISGSKLAWHTRLNIAIETATSLVFLHNSGIIHRDVKASNILLEESFRVKVADFGLSRYFPDFVTHVSTVPVGTHAYIDPDYYQSGRVSDKSDVYSFGVVLFQLISSKCPSVKEGNEFVTLAHFAMNKIINKALEELVDPSLGFDSDKNIMEMITAVAELAFQCVQCPKELRPSMKQVLEILKGIRKGTWGFNQIT 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2257g00001 286 Pfam Protein tyrosine and serine/threonine kinase 24 272 IPR001245 GO:0004672|GO:0006468
Gabi2257g00001 286 SMART serkin_6 13 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2257g00001 286 Gene3D Transferase(Phosphotransferase) domain 1 81 280 - -
Gabi2257g00001 286 FunFam Wall-associated receptor kinase 3 80 286 - -
Gabi2257g00001 286 ProSiteProfiles Protein kinase domain profile. 1 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2257g00001 286 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 20 279 IPR044652 GO:0004672
Gabi2257g00001 286 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
Gabi2257g00001 286 SUPERFAMILY Protein kinase-like (PK-like) 18 276 IPR011009 -
Gabi2257g00001 286 Gene3D Phosphorylase Kinase; domain 1 16 80 - -
Gabi2257g00001 286 PIRSF ILK 19 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2257g00001 Gabi-Chr2257 13469 14534 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2257g00001 20 276 Receptor kinase-like Gene Family AT1G25390 53.817 5.70e-89 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Gabi2257g00001 PK_Tyr_Ser-Thr 2.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2257g00001 - - mtr:25496807 395.586