Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2255g00021 ATGAGGATGAAAAGGAAAGGAAGTGAGTGTGACGAGTCCTCGAAATTGACTGACATTTTGAGATCCAATCATGGGTCTCCGTCGTCCAATTTTGAGACCCATTATTCGATGGAAGATTGTTCGAGGTTGAAGAAGAGGTGTAGAGAAAATACTAAGATAGACTCAGCTGGTTCCTACAAGAGTAGGGTGGCGGGTTTTGCCACTGCTCCTCCTTGTGGGACATTGTCTCTGATGACCGCGGGAAGAGGCCTAAAGAGGAAGATAGGTTGCATTGACGTGGCTACCCAGATGGGGAGGAAGAACAAGATTGAAGATGATTATGTTACTAGGGTGACGATCGGGAAAGGAAAGTATGGATCTGTTTCGTTGTGTAGGTCTCTTGTTGGCGGCGCGGAGTATGCGTGTAAGACTCTGAAGAAGGGGGATGAGACTGTTTACAGGGAGGTGGAGATAATGCAGCACTTGTCTGGGCATCCTGGGGTTGTGACTCTGCTGGCAGTGTATGAGGAAGCTGATTGCTCTCATCTGGTGATGGAATTGTGCTCTGGGGGAAGACTTGTCGACCAGATGTTTAGGGAGGGCCCTTGTTCTGAACAGCGGGCTGCTAATATACTTAAGGAAGTGATGTTGGTCATCAAGTATTGTCATGATATGGGAGTTGTGCACAGCGATATCAAGTTTTTTTGTTATCCTATGCCTCATTGTCTAGAAATTTGCATTGCAGGTCAGAACTTGACGGGTTTGGCTGGGAGCCCTGCATATGTTGCACCAGAAGTGTTGTTGGGTAGATACTCAGAAAAGGCGGATATATGGAGTGCTGGAGTGCTCCTGCATGCTCTGTTGGTTGGTGTTCTTCCATTTAAAGGGGATTCACAAGAAGCAGTTTTTGAGGCTATTAAGAATTCCAAGCTAGATTTCCAAACCGGGATGTGGGAATCAATATCTAAACCTGCACGAGATCTTGTTGGGAGAATGCTGACAAGGGATATTTCAGCAAGGATAACAGCTGATGAAGTACTTAGACATCCATGGATATCTTTCTACACAGAACGTACATTGAAGATCCTGCCCGTTGAATCAAAGTTGAAGCACCAAAATGGAGCTGCTTGCCACAACTTTGTTGCTGCACCTGAACCTAGGTTAGGAAGAAACAGGATGGATGATGGGTTCCTTAATGAGGTTTCAAGCCTTTCTTCATCATCTGAAAGTTGCAATTCATAA 1221 0.4554 MRMKRKGSECDESSKLTDILRSNHGSPSSNFETHYSMEDCSRLKKRCRENTKIDSAGSYKSRVAGFATAPPCGTLSLMTAGRGLKRKIGCIDVATQMGRKNKIEDDYVTRVTIGKGKYGSVSLCRSLVGGAEYACKTLKKGDETVYREVEIMQHLSGHPGVVTLLAVYEEADCSHLVMELCSGGRLVDQMFREGPCSEQRAANILKEVMLVIKYCHDMGVVHSDIKFFCYPMPHCLEICIAGQNLTGLAGSPAYVAPEVLLGRYSEKADIWSAGVLLHALLVGVLPFKGDSQEAVFEAIKNSKLDFQTGMWESISKPARDLVGRMLTRDISARITADEVLRHPWISFYTERTLKILPVESKLKHQNGAACHNFVAAPEPRLGRNRMDDGFLNEVSSLSSSSESCNS 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2255g00021 406 Pfam Protein kinase domain 108 226 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2255g00021 406 Pfam Protein kinase domain 243 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2255g00021 406 PANTHER SERINE/THREONINE-PROTEIN KINASE 94 366 - -
Gabi2255g00021 406 SUPERFAMILY Protein kinase-like (PK-like) 101 378 IPR011009 -
Gabi2255g00021 406 MobiDBLite consensus disorder prediction 1 18 - -
Gabi2255g00021 406 Gene3D Transferase(Phosphotransferase) domain 1 98 227 - -
Gabi2255g00021 406 MobiDBLite consensus disorder prediction 1 31 - -
Gabi2255g00021 406 ProSitePatterns Protein kinases ATP-binding region signature. 113 136 IPR017441 GO:0005524
Gabi2255g00021 406 Gene3D Transferase(Phosphotransferase) domain 1 237 354 - -
Gabi2255g00021 406 ProSiteProfiles Protein kinase domain profile. 107 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2255g00021 Gabi-Chr2255 318443 320492 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2255g00021 97 345 EF-hand Containing Proteins AT4G35310 40.741 3.34e-66 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMK1-DCAMKL Gabi2255g00021 Pkinase 1.2e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2255g00021 - - gmx:100812729 567.385