Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2255g00009 ATGGGCTATTTCTCTTGCAATGGCGAGTCCGCAATCGCCACCTGTGATCCCCACTACAAGCACCTCAAGAACAAGACCAAAACCAACACCAACTCTAAATCTAAAACCCATAACATCAGGGTCAGGGAGTTCTCCTACTCCGAACTCTTCGCCGCCACAAACGGCTTCTCCGCCGACACCTTCTTAGGAAAAGGAAGTCATGGCAGTGTCTACAGGGCCACCCTCGACGGAGGAAACCTCATCGCCGCCGTCAAAAGGAATAAACCCTCCGCCATTACCCACCACAACATCAACCCCGCAGACAACGAGATCGAGATTCTCTCACGTGTCGCAAGCCCTCGACGCCTCGTCAACCTCATCGGCTTCTGCACCCACCAAAACGACAACCTCATCGTCGTCGAGTATATGCCCAACGGTTCGCTTTACGAATTACTCCACAGAAAAGCGGTTCGACCGCCCGGTTGGACCCGCCGCGTCCGGTTCGCTCTCCAGGTTGCCAAGGCGGTTCACGAACTGCACTCCGCTGACCCGCCGGTCATCCACCGCGACATCAAGTCTTCCAACGTGCTCATCGACGGCCGATGGAACGCCAGGCTCGGAGATTTCGGCCTCGCACTCAGGGGAAACGTGGAGGACGTTCGCTTCACGTGCACGCCGCCGGCGGGGACGTTAGGTTACCTCGACCCGTGCTATCTTGCGCCGGCGGATCTCAGCACCAAAAGAGACGTCTTCAGCTTCGGGATCTTGCTACTCGAGATAACCAGCGGAAGAAATGCCATCGACGTGAACCATAGTCCGCCGTCGGTTTTGGACTGGGCGGTTCCGTTGATTAGGCGCGGCGAGTTCGCCGGAATCTGTGATCCGCGGATCGGACCGCCGTCGGATAAGGCGGCGATCCGGCAGTTAACGGTGCTGGCAGCGAGGTGCGTGAGATCGACGGTGGAGAAACGGCCGTCGATGGCGGAGGTAGCGGAGTGCCTTAAAGAAGTGAGGAAGAGGGTTCACGCGCCGCTGATATGGAGTAGCCTGAAGAAACGGGTGAAGGCGCGTGGGGGACCGTTGGTGAATGACTATGACAGGAGTGAAGAAGTTGTGAAAGGTGGTAGCAGAAGGAACGGGAAAGTATCCAGTGTGTCGGGTGTAGAGTATGAGAGTGAACCCGCGAATCGAGCGGTGAGGTCCAGGTCCATTGGTTCTGGTTTCTTTAGCGAGATTAAAATGAAGTCAGGTTCGGATCCGAATATGGGTGGGCACCCGAGCAAAATTGAATATGGGTTTGGGAGTAAGAAGGGTAAAATGGTAGTGACGACGAGGTTCAACAGATCGAGGTCTATGGGATTTTTGCAAAGCCCACGCCGTTTACGTTACGGCAGTGAGAATGTAATTGGAAAGTCAAAGATTAGTCATCAGAATCATAACAATAATTATGACCCAATTCGTTCGGGGAAGATGGCATTGTCTGAGTTGGTCATTATGGATAAGAAGTTGGAACAGAGAATGATTGAAAAACCATTAGTTTATTCACATCGCGTTGAGAATCAAAGTAATTGA 1551 0.5345 MGYFSCNGESAIATCDPHYKHLKNKTKTNTNSKSKTHNIRVREFSYSELFAATNGFSADTFLGKGSHGSVYRATLDGGNLIAAVKRNKPSAITHHNINPADNEIEILSRVASPRRLVNLIGFCTHQNDNLIVVEYMPNGSLYELLHRKAVRPPGWTRRVRFALQVAKAVHELHSADPPVIHRDIKSSNVLIDGRWNARLGDFGLALRGNVEDVRFTCTPPAGTLGYLDPCYLAPADLSTKRDVFSFGILLLEITSGRNAIDVNHSPPSVLDWAVPLIRRGEFAGICDPRIGPPSDKAAIRQLTVLAARCVRSTVEKRPSMAEVAECLKEVRKRVHAPLIWSSLKKRVKARGGPLVNDYDRSEEVVKGGSRRNGKVSSVSGVEYESEPANRAVRSRSIGSGFFSEIKMKSGSDPNMGGHPSKIEYGFGSKKGKMVVTTRFNRSRSMGFLQSPRRLRYGSENVIGKSKISHQNHNNNYDPIRSGKMALSELVIMDKKLEQRMIEKPLVYSHRVENQSN 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2255g00009 516 ProSiteProfiles Protein kinase domain profile. 56 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2255g00009 516 Pfam Protein kinase domain 59 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2255g00009 516 Gene3D Transferase(Phosphotransferase) domain 1 136 341 - -
Gabi2255g00009 516 SMART serkin_6 56 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2255g00009 516 Gene3D Phosphorylase Kinase; domain 1 18 135 - -
Gabi2255g00009 516 PANTHER OS01G0253100 PROTEIN 29 332 - -
Gabi2255g00009 516 FunFam Serine/threonine-protein kinase-like protein 136 340 - -
Gabi2255g00009 516 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Gabi2255g00009 516 SUPERFAMILY Protein kinase-like (PK-like) 40 339 IPR011009 -
Gabi2255g00009 516 ProSitePatterns Protein kinases ATP-binding region signature. 62 85 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2255g00009 Gabi-Chr2255 105612 107478 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2255g00009 40 328 Receptor kinase-like Gene Family AT3G59420 44.027 3.38e-68 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Gabi2255g00009 Pkinase 1e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2255g00009 - - jre:108982029 523.857