Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2255g00008 ATGGAATTTGACGAGCAAGAGGAGGAAATGGGGATCCCGGAGCCGCCGCCGCCGAGTTACGACTCGCTAGGAAACTCAGCTTCCAGGTCCAAAATCGGCGGCGCTGTCGGAGCTGAGGGAGCAGCATCCACCATTGGACGAAAAGGTGGGTTCAGCACAACTGGGACAGTTAGGTACAGGGAATGCCAGAAGAACCACGCCGTCAGCTTCGGAGGCCACGCCGTCGACGGCTGTTGTGAGTTCATGCCGGCGGGAGAGGAAGGAACCTTGGAGGCCGTGATTTGCGCGGCCTGTAACTGCCATCGGAATTTCCACCGCAAGGAGATCGACGGCGAGATGAGCTCTTATCAGCGGCCGCAGCCTCCGCAGCAGCTGCACCACCAGTATCACCAGCAATTCTCGCCTTACTACCACCGCGGACCACCTCATCCCGCCGGATACCTCCACCACCACTTGGCAACTCCTCCGATGGCGCAGCACAGGCCGCTGGCCCTCCCGGCTGCTGCGTCGGGAGGGGGAATGAGTAGGGAGGAGGAAGACATGTCGAATCCGAGCAGCAGCGGCGGCGGAGGAGGCGGAGGCAGCGGCGGAACTAAGAAGAGATTTAGGACCAAGTTCACGCAGGAGCAGAAGGAGAAGATGGGGGCATTTGCGGAGCAACTTGGTTGGAGAATCCAGAAGCATGATGAAGCTGCTGTTGAGCAATTCTGTGCTGAGAATTGTATTAAGAGAAACGTTTTCAAGGTTTGGATGCACAATAACAAGAACAACCCTGGTAAGAAACCCTAA 789 0.5754 MEFDEQEEEMGIPEPPPPSYDSLGNSASRSKIGGAVGAEGAASTIGRKGGFSTTGTVRYRECQKNHAVSFGGHAVDGCCEFMPAGEEGTLEAVICAACNCHRNFHRKEIDGEMSSYQRPQPPQQLHHQYHQQFSPYYHRGPPHPAGYLHHHLATPPMAQHRPLALPAAASGGGMSREEEDMSNPSSSGGGGGGGSGGTKKRFRTKFTQEQKEKMGAFAEQLGWRIQKHDEAAVEQFCAENCIKRNVFKVWMHNNKNNPGKKP 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2255g00008 262 MobiDBLite consensus disorder prediction 167 200 - -
Gabi2255g00008 262 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 58 109 IPR006456 -
Gabi2255g00008 262 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 59 108 IPR006456 -
Gabi2255g00008 262 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 43 257 - -
Gabi2255g00008 262 NCBIfam homeobox domain, ZF-HD class 199 256 IPR006455 -
Gabi2255g00008 262 MobiDBLite consensus disorder prediction 1 50 - -
Gabi2255g00008 262 FunFam Zinc-finger homeodomain protein 2 192 260 - -
Gabi2255g00008 262 Gene3D - 184 259 - -
Gabi2255g00008 262 Pfam ZF-HD protein dimerisation region 57 109 IPR006456 -
Gabi2255g00008 262 SUPERFAMILY Homeodomain-like 185 259 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2255g00008 Gabi-Chr2255 81248 82036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2255g00008 1 257 ZF-HD Transcription Factor Family AT4G24660 51.154 1.34e-69 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Gabi2255g00008 ZF-HD_dimer 9.2e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2255g00008 - - pvu:PHAVU_009G037900g 347.051