Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2254g00008 ATGGATGTTGCTAAGTTACATAGTTCTGATGATGATAACAAAAAGGAAGAAGAAGTTGTGCTTCCTGGGTTTAGATTCCATCCCACAGATGAAGAGCTTGTTGGGTTTTATCTGAAGAGAAAGGTGGAGAAAAAGCCTCTTCGAATTGAACTCATCAAACAAGTTGACATCTACAAATATGATCCATGGGATCTTCCAAAAGTGAATTCTTTGGGGGACAAAGAATGGTATTTTTTCTGTAGAAGAGGGAGAAAATACAGGAACAGCGTAAGGCCTAACAGGGTAACAATGTCTGGATTCTGGAAAGCCACAGGGATTGACAAGAGCATATATTGTGTGAAAGAACCACATGAATGCATTGGACTCAAGAAATCATTGGTCTATTACCGTGGAAGTGCTGGGAAAGGCACCAAAACTGATTGGATGATGCATGAGTTTCGCCTTCCACCTAATGGTAAAATCAACAACAATAATCCTCATGCCAATGACGTTCAAGAAGCTGAGGTGTGGACACTCTGCAGGATCTTCAAACGCATCCCATCATGCAAAAAGTACACTCCAAATTTGAAAGACTCAGCAACACTCACCAAACCAATCCCAATAGATTCTAAAACTTGTACCTTAGACTCTGTAGTCATGCAACAAATTGAAAGGAAACCAGTTGTTGGACAAGTTGATCACGAAAGGAAACACTTGTTTATGGGCCAGTTTGGTTCAGTGACTCATCAGGCTCCATCAACAGTGTCATATCCAAGTTCTTGGAATCATAATGCTGAGGATGCAATATTAGCAAATGATAATTGGGATGACATAAGATCTGTGGTTCAGTTTGCCATTGATCCCTCCACGGTTTATGATTGTACACAAACATATCTCCCTCCCTACTTTTCTTAG 894 0.4038 MDVAKLHSSDDDNKKEEEVVLPGFRFHPTDEELVGFYLKRKVEKKPLRIELIKQVDIYKYDPWDLPKVNSLGDKEWYFFCRRGRKYRNSVRPNRVTMSGFWKATGIDKSIYCVKEPHECIGLKKSLVYYRGSAGKGTKTDWMMHEFRLPPNGKINNNNPHANDVQEAEVWTLCRIFKRIPSCKKYTPNLKDSATLTKPIPIDSKTCTLDSVVMQQIERKPVVGQVDHERKHLFMGQFGSVTHQAPSTVSYPSSWNHNAEDAILANDNWDDIRSVVQFAIDPSTVYDCTQTYLPPYFS 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2254g00008 297 Gene3D NAC domain 29 180 IPR036093 GO:0003677|GO:0006355
Gabi2254g00008 297 Pfam No apical meristem (NAM) protein 22 148 IPR003441 GO:0003677|GO:0006355
Gabi2254g00008 297 SUPERFAMILY NAC domain 17 177 IPR036093 GO:0003677|GO:0006355
Gabi2254g00008 297 ProSiteProfiles NAC domain profile. 20 178 IPR003441 GO:0003677|GO:0006355
Gabi2254g00008 297 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 17 226 - -
Gabi2254g00008 297 FunFam NAC domain-containing protein 35 29 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2254g00008 Gabi-Chr2254 246565 250284 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2254g00008 14 178 NAC Transcription Factor Family AT5G39820 61.111 5.34e-74 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gabi2254g00008 NAM 4.5e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2254g00008 - - gmx:100819795 489.96