Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2254g00001 ATGATACCTAATTTTCTTATTTCAAGATTAACTGCATCATCATTTACATACTCCAAGAGTACCCAAACGCAATTGGGTTATCTGCTTCAACACAATGCTTGTCATTCTTTCTTCAATTCATTCACTTCACGCACCTCTTCTGATTGTGAATCAGATAGAAACCCCCAAAAAGGTGACACCTTTACCATATCTTACCTCATAAACTCATGTGGGTTGTCCCCAGAATTGGCTAGGGAGCGTTCCAGAAGGGTGAATTTGAAAAACCCAGATGGCCCAAATGTTGTTCTTGATCTTCTCAGGAACTATGGGTTTTCTAAAGCCCAGATTACAAAACTTGTCGGGAAATGTCCATTGGTGCTTGTTTCAAAAGCAGGGACTACACTTTTGCCTAAACTCAAGTTCTTCCATTCTATTGGGGTTTCCACCAATGACATGCCAAAGATCCTGATTTGTAACTACAACCTCTTGACAAGTAGCTTGAAGAAATGCCTTATTCCACGTTATGAGATCATCAGAAGTGTAGTTCGTGATGATTGGGAAGTTGTTAGAGCTTTGAGAAATTCCCCACGTAATTTTACATTTTCGTACTTAATGAATGATTTTATTCCAAACATTAAGGTTCTGAGACAATGTAGCGTGCCACAAGCTTCCATCTCTCTGCTTATAGTCAATTTTCCGAGTGCAGCATATGCAAAGCATTCCAAATTTGTGGAAGCTGTGAAGACTGTTAAGGATATTGGGTGTAATCCTTTGAAAAGAACTTTTGTAATGGCTGTCCAAGTGCTTTTAACTATGAGTAAAGCAGCGTGGGAATCGAGATTTGAGGTTTATGAGAGATGGGGCTGGAACCGTGAAATGACTCTTGGAGCATTTAGAAAATTTCCCAATTTTATGAAGCTGTCAGAGGAGACAATTACCAAAAAAATGAGTTTCATAGTGAAGAATATGGTTTGGCCATCAGAAGATATTGCCAAATATCCTTCAGTTCTATCCTACAGCTTGGAGAAGAGGATTACTCCTAGACTCTCAGTGATTAAAATCTTGAAATTAAAATGTTTGGTTGAGAATAATTTGCAATTAAGCTCCTTTATGTGCCGAACTGAGGAAAAGTTTTTGAAGAGATTTGTCATCAATTTTCAGGAAGATGTGCCTCTTTTACCAGATGTCTACAAAGGAATATCACGTTACTCTACTGAGGAGGAATGA 1206 0.3839 MIPNFLISRLTASSFTYSKSTQTQLGYLLQHNACHSFFNSFTSRTSSDCESDRNPQKGDTFTISYLINSCGLSPELARERSRRVNLKNPDGPNVVLDLLRNYGFSKAQITKLVGKCPLVLVSKAGTTLLPKLKFFHSIGVSTNDMPKILICNYNLLTSSLKKCLIPRYEIIRSVVRDDWEVVRALRNSPRNFTFSYLMNDFIPNIKVLRQCSVPQASISLLIVNFPSAAYAKHSKFVEAVKTVKDIGCNPLKRTFVMAVQVLLTMSKAAWESRFEVYERWGWNREMTLGAFRKFPNFMKLSEETITKKMSFIVKNMVWPSEDIAKYPSVLSYSLEKRITPRLSVIKILKLKCLVENNLQLSSFMCRTEEKFLKRFVINFQEDVPLLPDVYKGISRYSTEEE 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2254g00001 401 PANTHER CGI-12 PROTEIN-RELATED 59 377 IPR003690 GO:0003690|GO:0006355
Gabi2254g00001 401 FunFam Mitochondrial transcription termination factor-like 160 383 - -
Gabi2254g00001 401 Gene3D Transcription termination factor 3, mitochondrial 177 382 IPR038538 -
Gabi2254g00001 401 SMART mt_12 182 214 IPR003690 GO:0003690|GO:0006355
Gabi2254g00001 401 SMART mt_12 288 319 IPR003690 GO:0003690|GO:0006355
Gabi2254g00001 401 SMART mt_12 320 351 IPR003690 GO:0003690|GO:0006355
Gabi2254g00001 401 SMART mt_12 253 283 IPR003690 GO:0003690|GO:0006355
Gabi2254g00001 401 SMART mt_12 146 177 IPR003690 GO:0003690|GO:0006355
Gabi2254g00001 401 SMART mt_12 110 141 IPR003690 GO:0003690|GO:0006355
Gabi2254g00001 401 Pfam mTERF 195 372 IPR003690 GO:0003690|GO:0006355
Gabi2254g00001 401 Pfam mTERF 96 311 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2254g00001 Gabi-Chr2254 37470 41235 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Gabi2254g00001 mTERF 1.6e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2254g00001 K15031 - gmx:100786641 506.523