Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2253g00001 ATGCCTCCTAGAACGGTGAAGAGAGGGGCTGCGTCGAGTGGTGCGAAGAGGGGTGGTAGAGGAACAAGGGGTACCCCGAAGAAGGAACCTGAAGCTGTGGAAGAGGTTGTGAAGCTTGAAGAGAAATCGGTTGTTGAAGAGGAGGAGGAACAAAAAGTCAAAGAGAACCCTGTTATTGAGGAGAAACCTGTTGTGGAAGAGAAACCTGTTGTTGAGGACAAGTCTATTGATATGAATCAAATGGCTCCAGAGGCTATGGAAGAAGCGGCACACGTGTCTAGTGGGTTGGATGTGGTGAAAAACGACGAAGAGGAGGTTAAGGAGTCCTTAGATGAATATGAAAAAGATGAACGCTTAGATTTGGAGGATAACGAGTATGAAGCTGAGGAGTATGGGGGAGTTGATTACGATGAGAAGGAAATTGAACAAGATGAGGTTCATGAGGTAGGAGATGAAGCAGAGGAAGAAGCTGAAGATAATGTAGGTGAAGAAGAGGGTGATACGGGTGAGGAAGAAGTTGAAGATGGTCATGATGAAATTGAAGGTGAAGAGTATGACGAGCGTGCTGGTGAGGAGCATGAGCATGTGGAGTTGGCTGATGTGGAGGAAGAGGAACACCGTGAAGTTGTAAAGGAGAGGCGAAAGCGGAAAGAATTTGAAGTATTTGTTGGGGGTCTAGACAAGGATGCTACTGAAAGTGATCTGAGGAAGGTTTTCAGTGAAGTTGGGATGGTTACTGAGGTTAGGCTGATGATGAACCCTCAGACTAAAAAGAACAAGGGATTTGCATTCTTGCGTTTTGAAACTGTTGAACAAGCAAAACAAGCTGTAGCTGAGCTAAAAAATCCAGTGATTAATGGCAAACAGTGTGGGGTTACTCCAAGTCAGGACAGTGATACGCTCTACTTGGGAAACATATGCAAGACATGGAAAAAGGAAGCTTTAAAGGAGAAGTTGAAACATTATGGAGTTACAAATGTTGAGGATTTGACATTGGTAGAAGATAGTAACGATGAAGGAATGAACAGGGGGTTTGCGTTTTTGGAATTTCCCTCTCGTTCAGATGCTATGGATGCCTTTAAGCGACTGCAGAAGAGGGATGTTGTGTTTGGAGTTGATAAGCCTGCAAAGGTTTCTTTTGCAGATTCCTTTATTGACCCGGGTGATGAAATTATGGCACAGGTTAAAACTGTGTTTATTGATGCACTCCCTCCCTCGTGGGATGAAGATTATGTCCAAGATCTTCTTAAGAAATATGGAGAGATTGAAAAGGTTGAGCTTGCCAGGAACATGCCAGCTGCGCGCAGGAAGGACTATGGATTTGTTACATTTGGCTCGCATGATGCTGCCGTAAGATGTGCTGAAAGCATTACTGGTACAGAGTTGGGTGAAGGTGACAAGAAGGCAAAAGTCCGGGCTAGGTTGTCAAGACCACTTCAAAGAGGCCGTGGAAAACATGTTAGTCATGGGGACTATCGTTCTGGTCGCGGATCTGGAATAATGGCTAGGCCTTCATGGAGCCGACCTGCACCGCGTAGTTTTCCTTCCCGTGGGGTAAGAGGAATCGGAAGTCGTGTTCCGCCACTCAGGCCTGTTAGTATGAGAGATAGACGCCCTGTCATGTCCATGCCAGTTAGAAGTAGGCCAATGGCTCCTCCAGCTAGATCTTATGATCGGAGACAGGCTGCTCCTGCATATCCAAAAAGTAGCATGAAGAGAGATTATGGTCGACGTGAGGATCTGCCACCTCCAAGAAGTAGAGTTGCTGCAGATTATGGCTCAAGGGTGGCATCTGAAAGACGACCATCTTACAGGGAATATCCAGTCCGTGGTCCTGGCTACTCTGATCTCCCGAGAAGTACATCTCGTGCCGCACCAAGGAGAGGTTATGTTGATGATGGTTATGGCCAAAGATTTGAGAGGCCTCCTCCTCCACCACCACCTCCTCATCTAAATTACCGCGAAGGACGCCCCCGTGATTATGATTCTTTATCTGGCTCAAAACGTTCTTATGATGCTATAGATGATGTTCCTCCACGATATGCGGATACTGGTTCTCGCCAATCAAGAGCTCGATTGGATTATGACTATGGTGGTAGTGCTTCACAGTATGGAGATGCCTACGGTGATAGACTTGGAAGATCCAGTATGGGATATGGTGGGGGCAGCAGAAGTTCTATTAGTGGTCAAGATTCACATGGGATGTATAGCAGTCGACAAGGCATGAGTTATGGTGGAGGTTCGTTTGGTGGTGGTGATGTTGGTAGCATGTACTCATCAAGTTATGGTGGTGATTACATTTCTCGTGGCAGTGATGTTGGTGGCAGCTCGTATTCATCGATGTATTCTGGCAGGGGTATGGGTGGTGGTAGCAGTTACATGAGTGGTGGTGGATCCGGATCTTATTATTGA 2412 0.4639 MPPRTVKRGAASSGAKRGGRGTRGTPKKEPEAVEEVVKLEEKSVVEEEEEQKVKENPVIEEKPVVEEKPVVEDKSIDMNQMAPEAMEEAAHVSSGLDVVKNDEEEVKESLDEYEKDERLDLEDNEYEAEEYGGVDYDEKEIEQDEVHEVGDEAEEEAEDNVGEEEGDTGEEEVEDGHDEIEGEEYDERAGEEHEHVELADVEEEEHREVVKERRKRKEFEVFVGGLDKDATESDLRKVFSEVGMVTEVRLMMNPQTKKNKGFAFLRFETVEQAKQAVAELKNPVINGKQCGVTPSQDSDTLYLGNICKTWKKEALKEKLKHYGVTNVEDLTLVEDSNDEGMNRGFAFLEFPSRSDAMDAFKRLQKRDVVFGVDKPAKVSFADSFIDPGDEIMAQVKTVFIDALPPSWDEDYVQDLLKKYGEIEKVELARNMPAARRKDYGFVTFGSHDAAVRCAESITGTELGEGDKKAKVRARLSRPLQRGRGKHVSHGDYRSGRGSGIMARPSWSRPAPRSFPSRGVRGIGSRVPPLRPVSMRDRRPVMSMPVRSRPMAPPARSYDRRQAAPAYPKSSMKRDYGRREDLPPPRSRVAADYGSRVASERRPSYREYPVRGPGYSDLPRSTSRAAPRRGYVDDGYGQRFERPPPPPPPPHLNYREGRPRDYDSLSGSKRSYDAIDDVPPRYADTGSRQSRARLDYDYGGSASQYGDAYGDRLGRSSMGYGGGSRSSISGQDSHGMYSSRQGMSYGGGSFGGGDVGSMYSSSYGGDYISRGSDVGGSSYSSMYSGRGMGGGSSYMSGGGSGSYY 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2253g00001 803 MobiDBLite consensus disorder prediction 719 739 - -
Gabi2253g00001 803 SUPERFAMILY RNA-binding domain, RBD 220 363 IPR035979 GO:0003676
Gabi2253g00001 803 SUPERFAMILY RNA-binding domain, RBD 391 499 IPR035979 GO:0003676
Gabi2253g00001 803 MobiDBLite consensus disorder prediction 571 585 - -
Gabi2253g00001 803 MobiDBLite consensus disorder prediction 718 739 - -
Gabi2253g00001 803 MobiDBLite consensus disorder prediction 90 205 - -
Gabi2253g00001 803 Coils Coil 96 119 - -
Gabi2253g00001 803 MobiDBLite consensus disorder prediction 478 689 - -
Gabi2253g00001 803 MobiDBLite consensus disorder prediction 115 187 - -
Gabi2253g00001 803 MobiDBLite consensus disorder prediction 188 205 - -
Gabi2253g00001 803 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 219 297 IPR000504 GO:0003723
Gabi2253g00001 803 MobiDBLite consensus disorder prediction 97 114 - -
Gabi2253g00001 803 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 221 289 IPR000504 GO:0003723
Gabi2253g00001 803 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 301 367 IPR000504 GO:0003723
Gabi2253g00001 803 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 398 463 IPR000504 GO:0003723
Gabi2253g00001 803 SMART rrm1_1 220 293 IPR000504 GO:0003723
Gabi2253g00001 803 SMART rrm1_1 397 472 IPR000504 GO:0003723
Gabi2253g00001 803 SMART rrm1_1 300 379 IPR000504 GO:0003723
Gabi2253g00001 803 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 152 299 - -
Gabi2253g00001 803 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 299 383 IPR000504 GO:0003723
Gabi2253g00001 803 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 14 788 - -
Gabi2253g00001 803 Coils Coil 36 56 - -
Gabi2253g00001 803 Gene3D - 300 382 IPR012677 -
Gabi2253g00001 803 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 396 478 IPR000504 GO:0003723
Gabi2253g00001 803 CDD RRM_SF 398 472 - -
Gabi2253g00001 803 FunFam Heterogeneous nuclear ribonucleoprotein Q 300 382 - -
Gabi2253g00001 803 CDD RRM_SF 221 292 - -
Gabi2253g00001 803 Gene3D - 134 299 IPR012677 -
Gabi2253g00001 803 FunFam RNA recognition water-stress protein1 386 507 - -
Gabi2253g00001 803 MobiDBLite consensus disorder prediction 1 35 - -
Gabi2253g00001 803 Gene3D - 386 503 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2253g00001 Gabi-Chr2253 27279 33871 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2253g00001 221 463 Eukaryotic Initiation Factors Gene Family AT3G16380 25.869 1.14e-14 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2253g00001 - - gmx:100779340 1101.66