Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2252g00012 ATGGGGAGTAGAAGCAGGGTTGGTGTTGAAGATGACAAGGGAGCAGAAAGAGGGATGCCGAGCTTTGATTCTCAAGATGTCTGCTATACACAGGGGAGCACAATTGATTCTTTTCATGTTTCTGACTTTGGAGCATTTGATCAATCATATCGCTTAGAGGATGCTGTCGATGTGAGTGGAAGTAAGTATTCCTTTTTTAACTCACTAAAAGTAAGTAGCCAAACAATTTCTCTGGATCCTGTTCAAATTAGTACTCTTGGTAAGTTGCCAACTTCACTTGATAAAAGCCCATTGACGAACCAAACAGAGCTGCATAGGTTGCAATTACAAAAGGTTCAGTCATCAAATCCTGGCACCATATTAGGTGGTAATACAGAAAACCAGGAAGAGTCTGCCATGGCTGATGTCAGTCCTCGGACCGATATTTCTACAGATGGTGACACTGATGACAAGAATCAGCGGTTTGATAGAAGTCAATCCCTTGCCGCTGTGGCTTCTGACTCCAGTGACAGATCAAAGGACAAATCAGATCAGAAGAGTCTTCGGAGGCTTGCTCAGAATCGTGAGGCTGCGAGAAAAAGCCGATTGAGAAAGAAAGCCTATGTCCAACAGTTGGAAAGTAGTCGTTTAAAGCTGACCCAACTAGAGCAAGAGCTTCAGCGAGCTAGGCAGCAGGGAATCTTCATATCAAGCTCGGGTGATCAAGCACATACAATGAGTGGAAATGGGGCGATGCAATTTGATGCAGAATATGCAAGGTGGCTGGAAGAGCAGAATCGACAAATTAATGAGCTGAGAGCGGCTGTAAATTCTCATGCAAGTGATACCGAACTTCGCATGATTGTTGATGGTATAGTGGCACATTATGAAGAGGTTTTTAGGCTGAAAGGTGTTGCAGCTAAGGCTGATGTTTTCCATTTGTTGTCTGGTATGTGGAAAACACCTGCTGAGAGGTGTTTCATGTGGCTTGGTGGTTTTCGGTCGTCTGAAATCCTCAAGCTCCTGGTAGGTCAGTTGGAACCTCTCACAGAGCAGCAGCTGGTGGGTATTACAAACTTGCAGCAATCCTCCCAACAAGCAGAAGATGCATTGTCTCAGGGCATGGAAGCATTGCAACAGTCCCTTGCAGAGACATTGTCCACTGGAACACCTGGCTCATCTGGTCCATCAGGGAATGTGGCAAATTACATGGGTCAAATGGCCATGGCCATGGGGAAGCTAGGGACACTCGAGGGGTTTATTCGACAGGCTGACAATCTGCGCCAGCAGACTCTACAACAAATGCACCGTATACTGACAACTCGCCAATCAGCTCGCGCACTCCTTGCTATCCATGACTACTTTTCGAGGCTGCGCGCTCTCAGTTCACTCTGGCTGGCCCGCCCAAGAGATTGA 1395 0.4659 MGSRSRVGVEDDKGAERGMPSFDSQDVCYTQGSTIDSFHVSDFGAFDQSYRLEDAVDVSGSKYSFFNSLKVSSQTISLDPVQISTLGKLPTSLDKSPLTNQTELHRLQLQKVQSSNPGTILGGNTENQEESAMADVSPRTDISTDGDTDDKNQRFDRSQSLAAVASDSSDRSKDKSDQKSLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQAHTMSGNGAMQFDAEYARWLEEQNRQINELRAAVNSHASDTELRMIVDGIVAHYEEVFRLKGVAAKADVFHLLSGMWKTPAERCFMWLGGFRSSEILKLLVGQLEPLTEQQLVGITNLQQSSQQAEDALSQGMEALQQSLAETLSTGTPGSSGPSGNVANYMGQMAMAMGKLGTLEGFIRQADNLRQQTLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWLARPRD 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2252g00012 464 MobiDBLite consensus disorder prediction 142 156 - -
Gabi2252g00012 464 SUPERFAMILY Leucine zipper domain 179 222 IPR046347 GO:0003700|GO:0006355
Gabi2252g00012 464 CDD bZIP_HBP1b-like 179 231 - -
Gabi2252g00012 464 Pfam Basic region leucine zipper 175 221 IPR004827 GO:0003700|GO:0006355
Gabi2252g00012 464 Coils Coil 198 225 - -
Gabi2252g00012 464 Coils Coil 255 275 - -
Gabi2252g00012 464 ProSiteProfiles DOG1 domain profile. 244 461 IPR025422 GO:0006351|GO:0043565
Gabi2252g00012 464 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 177 221 IPR004827 GO:0003700|GO:0006355
Gabi2252g00012 464 PANTHER TRANSCRIPTION FACTOR TGA9 112 463 - -
Gabi2252g00012 464 Pfam Seed dormancy control 261 335 IPR025422 GO:0006351|GO:0043565
Gabi2252g00012 464 MobiDBLite consensus disorder prediction 1 19 - -
Gabi2252g00012 464 MobiDBLite consensus disorder prediction 168 191 - -
Gabi2252g00012 464 MobiDBLite consensus disorder prediction 109 197 - -
Gabi2252g00012 464 MobiDBLite consensus disorder prediction 109 138 - -
Gabi2252g00012 464 MobiDBLite consensus disorder prediction 1 23 - -
Gabi2252g00012 464 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 182 197 IPR004827 GO:0003700|GO:0006355
Gabi2252g00012 464 Gene3D - 178 230 - -
Gabi2252g00012 464 SMART brlzneu 175 238 IPR004827 GO:0003700|GO:0006355
Gabi2252g00012 464 FunFam BZIP family transcription factor 178 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2252g00012 Gabi-Chr2252 285902 303779 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2252g00012 133 464 bZIP Transcription Factor Family AT3G12250 78.614 0.0 523
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gabi2252g00012 DOG1 1.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2252g00012 K14431 - gmx:100101881 741.495