Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2252g00011 ATGGGGAGTAGAAGCAGGGTTGGTGTTGAAGATGACAAGGGAGCAGAAAGAGGGATGCCGAGCTTTGATTCTCAGTTGCCCATTTCAAATTCACGCTATACACAGGGGAGCACAATTGATTCTTTTCATGTTTCTGACTTTGGAGCATTTGATCAATCATATCGCTTAGAGGATGCTGTCGATGTGAGTGGAAACTCAGTTTTTAACTCACTAAAAGTAAGTAGCCAAACAATTTCTCTGGATCCTGTTCAAATTAGTACTCTTGGTAAGTTGCCAACTTCACTTGATAAAAGCCCATTGACGAACCAAACAGAGCTGCATAGGTTGCAATTACAAAAGGTTCAGTCATCAAATCCTGGCACCATATTAGGTGGTAATACAGAAAACCAGGAAGAGTCTGCCATGGCTGATGTCAGTCCTCGGACCGATATTTCTACAGATGGTGACACTGATGACAAGAATCAGCGGTTTGATAGAAGTCAATCCCTTGCCGCTGTGGCTTCTGACTCCAGTGACAGATCAAAGGACAAATCAGATCAGAAGAGTCTTCGGAGGCTTGCTCAGAATCGTGAGGCTGCGAGAAAAAGCCGATTGAGAAAGAAAGCCTATGTCCAACAGTTGGAAAGTAGTCGTTTAAAGCTGACCCAACTAGAGCAAGAGCTTCAGCGAGCTAGGCAGCAGGGAATCTTCATATCAAGCTCGGGTGATCAAGCACATACAATGAGTGGAAATGGGGCGATGCAATTTGATGCAGAATATGCAAGGTGGCTGGAAGAGCAGAATCGACAAATTAATGAGCTGAGAGCGGCTGTAAATTCTCATGCAAGTGATACCGAACTTCGCATGATTGTTGATGGTATAGTGGCACATTATGAAGAGGTTTTTAGGCTGAAAGGTGTTGCAGCTAAGGCTGATGTTTTCCATTTGTTGTCTGGTATGTGGAAAACACCTGCTGAGAGGTGTTTCATGTGGCTTGGTGGTTTTCGGTCGTCTGAAATCCTCAAGCTCCTGGTAGGTCAGTTGGAACCTCTCACAGAGCAGCAGCTGGTGGGTATTACAAACTTGCAGCAATCCTCCCAACAAGCAGAAGATGCATTGTCTCAGGGCATGGAAGCATTGCAACAGTCCCTTGCAGAGACATTGTCCACTGGAACACCTGGCTCATCTGGTCCATCAGGGAATGTGGCAAATTACATGGGTCAAATGGCCATGGCCATGGGGAAGCTAGGGACACTCGAGGGGTTTATTCGACAGGCTGACAATCTGCGCCAGCAGACTCTACAACAAATGCACCGTATACTGACAACTCGCCAATCAGCTCGCGCACTCCTTGCTATCCATGACTACTTTTCGAGGCTGCGCGCTCTCAGTTCACTCTGGCTGGCCCGCCCAAGAGATTGA 1401 0.4668 MGSRSRVGVEDDKGAERGMPSFDSQLPISNSRYTQGSTIDSFHVSDFGAFDQSYRLEDAVDVSGNSVFNSLKVSSQTISLDPVQISTLGKLPTSLDKSPLTNQTELHRLQLQKVQSSNPGTILGGNTENQEESAMADVSPRTDISTDGDTDDKNQRFDRSQSLAAVASDSSDRSKDKSDQKSLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQAHTMSGNGAMQFDAEYARWLEEQNRQINELRAAVNSHASDTELRMIVDGIVAHYEEVFRLKGVAAKADVFHLLSGMWKTPAERCFMWLGGFRSSEILKLLVGQLEPLTEQQLVGITNLQQSSQQAEDALSQGMEALQQSLAETLSTGTPGSSGPSGNVANYMGQMAMAMGKLGTLEGFIRQADNLRQQTLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWLARPRD 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2252g00011 466 PANTHER TRANSCRIPTION FACTOR TGA9 114 465 - -
Gabi2252g00011 466 MobiDBLite consensus disorder prediction 109 140 - -
Gabi2252g00011 466 Pfam Seed dormancy control 263 337 IPR025422 GO:0006351|GO:0043565
Gabi2252g00011 466 Gene3D - 180 232 - -
Gabi2252g00011 466 FunFam BZIP family transcription factor 180 229 - -
Gabi2252g00011 466 SUPERFAMILY Leucine zipper domain 181 224 IPR046347 GO:0003700|GO:0006355
Gabi2252g00011 466 MobiDBLite consensus disorder prediction 144 158 - -
Gabi2252g00011 466 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 184 199 IPR004827 GO:0003700|GO:0006355
Gabi2252g00011 466 SMART brlzneu 177 240 IPR004827 GO:0003700|GO:0006355
Gabi2252g00011 466 CDD bZIP_HBP1b-like 181 233 - -
Gabi2252g00011 466 Pfam Basic region leucine zipper 177 223 IPR004827 GO:0003700|GO:0006355
Gabi2252g00011 466 Coils Coil 257 277 - -
Gabi2252g00011 466 Coils Coil 200 227 - -
Gabi2252g00011 466 MobiDBLite consensus disorder prediction 1 18 - -
Gabi2252g00011 466 ProSiteProfiles DOG1 domain profile. 246 463 IPR025422 GO:0006351|GO:0043565
Gabi2252g00011 466 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 179 223 IPR004827 GO:0003700|GO:0006355
Gabi2252g00011 466 MobiDBLite consensus disorder prediction 1 30 - -
Gabi2252g00011 466 MobiDBLite consensus disorder prediction 170 193 - -
Gabi2252g00011 466 MobiDBLite consensus disorder prediction 109 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2252g00011 Gabi-Chr2252 285108 303779 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2252g00011 135 466 bZIP Transcription Factor Family AT3G12250 78.614 0.0 525
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gabi2252g00011 DOG1 1.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2252g00011 K14431 - gmx:100101881 763.066