Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2252g00006 ATGGGAAAAAACATCTCTGTTGCTAAGTTCTATTGTCTACATGTTACCAGCCCCTGGCCGATCACCCTTGTTAAGACCCATGGTCCTAGCATGCTTCCTACAATAGATTTGATGAACGTGTTTTTGGGGGAAAGGATCCCAACTCGATTTGGTAAAGTTGCTCTTGCTCGTGGAGATATTATAGTCTTGCGCTCACCTCGAAACCCTAGAAAGTTTATCGTCAAACGCTTGGTTGGAATGGAGGGTGATAGCATTACATACAATTCTCGTACCCAGAAGACAAATAAGCATACGACAGTTTTGGTTCCAAAGGGTCACGTTTGGGTACAAGGAGATAACATTTACAATAGTAAAGATTCAACACATTTTGGACCTGTTCCCTATGGCCATATTCAGAGAAGGATATTCTGGAGGGTATGGCCACTTGAAAAATTTGGACCTTTCTGGAAAAAACATCTGAAGCTTTCAACCATGAGGTAG 480 0.4208 MGKNISVAKFYCLHVTSPWPITLVKTHGPSMLPTIDLMNVFLGERIPTRFGKVALARGDIIVLRSPRNPRKFIVKRLVGMEGDSITYNSRTQKTNKHTTVLVPKGHVWVQGDNIYNSKDSTHFGPVPYGHIQRRIFWRVWPLEKFGPFWKKHLKLSTMR 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2252g00006 159 PANTHER PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED 7 150 - -
Gabi2252g00006 159 SUPERFAMILY LexA/Signal peptidase 22 153 IPR036286 -
Gabi2252g00006 159 Pfam Signal peptidase, peptidase S26 95 140 IPR019533 GO:0004252|GO:0006465
Gabi2252g00006 159 Pfam Signal peptidase, peptidase S26 24 90 IPR019533 GO:0004252|GO:0006465
Gabi2252g00006 159 Gene3D Umud Fragment, subunit A 19 158 - -
Gabi2252g00006 159 CDD S26_SPase_I 23 135 IPR019533 GO:0004252|GO:0006465
Gabi2252g00006 159 PRINTS Bacterial leader peptidase 1 (S26A) family signature 73 85 IPR000223 GO:0006508|GO:0008236|GO:0016020
Gabi2252g00006 159 PRINTS Bacterial leader peptidase 1 (S26A) family signature 19 35 IPR000223 GO:0006508|GO:0008236|GO:0016020
Gabi2252g00006 159 PRINTS Bacterial leader peptidase 1 (S26A) family signature 102 121 IPR000223 GO:0006508|GO:0008236|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2252g00006 Gabi-Chr2252 185972 212541 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2252g00006 31 148 MADS-box Gene Family AT1G29960 52.101 2.16e-39 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2252g00006 K09647 - cave:132170793 172.17