LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi2252g00005	ATGCTGAGTTCTTTTGGTTCCTGTGCAGTATTGCACCCCGTTTTATTTTCATTGACCTGTGAAGACGTGTGGGGTTTATCCCTCCTCTCTGTGTGTGTGTCCTTTTGTGCTTGGTTAATAACTTACATAACTTTTGATGAAGTTTGGATCATGAGACTTTGTTCAAGTGAACAAAGCACTTATCTTCCACTAAGGATAGCAACATTCTGGATTCATACCTGGGGAGAGAGGAAAAGGGAAGTGATGGGATTGAGAAACCTGGGGCCATTTGGGACTTTTATTAAAGAAGCATGGGAAAAAACATTCTCTATTGCTAAGGTCTTCTGTTGTCTACATATTACCAACACCTATCTGATCACCCCTGTTCAGACCTATGGTCCTAGCATGCTTCCTACAATAGATTTGACAGCAAACGTGTTTTTCGCGGAAAGTATCTCAACTCGATCTGGTAAAGTCACTCGTGGAGATATTATAGTCTTGCGCTCACCTCAAAACCCTAGAAAGTTTATCACCAAACGCGTGGTTGGAATGGAGGGTGATAGCATTACATACATTTCTAGTACCGAGAACAGTGATAAGCATGAGACAGTTTTGATTCCAAAGGGTCACATTTGGGTACAAGGAGATAACATGTATAATACCATAGATTCAAGAAATTTTGGACCTGTTCCCTATGGCCTTATTCAGAGCAGGATATTCTGGAGGGTATGGCCACTTACAAAATTTGGACCTTTCTGGAAAAAATGA	747	0.4096	MLSSFGSCAVLHPVLFSLTCEDVWGLSLLSVCVSFCAWLITYITFDEVWIMRLCSSEQSTYLPLRIATFWIHTWGERKREVMGLRNLGPFGTFIKEAWEKTFSIAKVFCCLHITNTYLITPVQTYGPSMLPTIDLTANVFFAESISTRSGKVTRGDIIVLRSPQNPRKFITKRVVGMEGDSITYISSTENSDKHETVLIPKGHIWVQGDNMYNTIDSRNFGPVPYGLIQSRIFWRVWPLTKFGPFWKK	248

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi2252g00005	248	CDD	S26_SPase_I	121	232	IPR019533	GO:0004252\|GO:0006465
	Gabi2252g00005	248	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	199	218	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Gabi2252g00005	248	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	117	133	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Gabi2252g00005	248	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	170	182	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Gabi2252g00005	248	SUPERFAMILY	LexA/Signal peptidase	116	245	IPR036286	-
	Gabi2252g00005	248	Gene3D	Umud Fragment, subunit A	114	247	-	-
	Gabi2252g00005	248	FunFam	Inner membrane protease subunit 1	115	244	-	-
	Gabi2252g00005	248	PANTHER	PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED	91	245	-	-
	Gabi2252g00005	248	Pfam	Signal peptidase, peptidase S26	193	237	IPR019533	GO:0004252\|GO:0006465
	Gabi2252g00005	248	Pfam	Signal peptidase, peptidase S26	104	184	IPR019533	GO:0004252\|GO:0006465

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi2252g00005	Gabi-Chr2252	167223	171115	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi2252g00005	129	245	MADS-box Gene Family	AT1G29960	54.701	2.04e-45	146

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi2252g00005	K09647		-	cave:132170793	215.698