Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2252g00003 ATGAAAACCAGAGTTCCGTGCTGTTCCATTTGCCAAACGCGGTACAACGAGGAGGAGCGGGTTCCGCTCATGCTCCAATGCGGCCACGGTTTCTGCAAAGAATGCCTTTCTAGAATATTCTCGGCGTCGCCGGACACCACGCTGACGTGTCCGCGGTGCCGCCACGTCTCCACCGTCGGAAACTCCGTTCAAGCTCTCCCTAAGAATTACGCCGTCATCGGCCTCCTTCGCAGGCCCTCGCCTAAAGCAGTTAGGTCCGTTTTCGACTTCAATTTTGACTACACCGAAGACGAAGACGAAGACGAAGAAGAAGATGACGTGGACGTGGCGCGGCGGCGGAGCCATGTGGCGCAGAAGTCGTGGTCGGGGAGGATCGGGGATTTGAGGTTGGTGAAGCGGATTGGGGAGGGGAGGAGGTCTGACGTGGAGATGTGGACGGCGGTGATTGGCGGCCGGCATAAGGTGGCGGTGAAGAAGGTTGCGGTGGTGGGGGAGGTGGTGGAGTGGATGATGGAGAAGCTTGAATTGTTGCGTCGGGGTTCGATGTGGTGTAGGAATGTGTGCACGTTTCATGGGGCAGTGAAGGTGGATAACTGTTTGTGCATTGTCATGGACAGGTGTTATGGATCGCTTCAGTCTGAGATGCACCGCAACGAGGGCAGGCTTACTTTGGAGCAAGTCCTTAGATATGGGGCAGACATTGCGCGAGGGATTGCTGAGCTACATGCTGCAGGCATTGTTTGCATGAATATAAAACCATCCAATCTTCTTCTTGATCCAGACGGTCATGCAGTGGTTTCTGATTACGGACTTGCTGCAATTCTAAAGAAGCCTTCCTGTTGGAAGGCCCAACCAGAGTGTGACTCCTCAAAAACACACTCCTGTATGGAATGTACAATGCTCAGTCCACATTACACAGCTCCAGAGGCTTGGGGGGAACCGGTGAAGAAGTCATTAAATTTGTTCAGGGATGATGCAATAGGTATATCTGCAGAGTCTGATGCCTGGAGTTTTGGTTGTACACTGGTGGAGATGTGCACTGGTTCTGTTCCTTGGGCTGGTTTAAGTTCAGAGGAAATTCATCAAGCGGTTGTCAAAGCAAAGAATCAGCCCCCACAGTATGCTAGTGTGGTTGGTGGTGGAATACCTAGGGATTTGTGGAAGATGATTGGAGAGTGCTTGCAGTTCAAGCCATCTAAAAGGCCTAGTTTTAGCGCAATGCTAGCAATATTTCTCCGTCATTTGCAGGAAATACCACACAGCCCTCCTTCGAGCCCTGATAATGACTTTGTTAAAAGCTTTGCATCACATGTGATGGAGCTGTCCCCTGTTCCTGATTTAGATGTTACTCAGCAAAGCCCAAGCCATCTTCATCGACTTGTGTCTGCGGGGGACGTCAGAGGTGTTAGAGATCTTCTTGTAAAGGCTGCATCAGAACGTGGCAGCAACTACATATCTTCTCTATTCGAAGTACAAAATATTGATGGACAAACTGCCCTCCACTTGGCTTGTAGACGTGGCTGTGCAAAGCTTGTTGAGGCAATCTTGGAGTATCCAGAGGCAAATGTTGATGTCTTGGACAAAGATGGAGATCCTCCTCTCTTTTTTGCATTAGCTACTGGATCCCCGGAATGTGTTCATTGTCTTGTCAAAAGAAATGCTAATGTTAGGTCACGATTGAGAGATGGCTTTGGCCCATCTATTGCTCATGTTTGTGCCGATCATGGCCAACCAGATTGCATGAAAGAATTACTACTTGCTGGAGCTGATCCTAATGCTGTGGATGATGACGGTGAATCTGTACTGCACAGAGCAGTTGCAAAGAAGTACACTGACTGTGCTCTTGTGATATTGGAGAATGGAGGCAGTAGATCAATGGCCATCTTGAATTCGAAGAATCTCACACCTCTGCACTTGTGTGTGGCATCATGGAATGTAGCCATTGTGAAAAGATGGGTGGAAGTTGCAACTTCTGATGAGATTGCTGAATCAATTGACATACCAAGCCCTATTGGTACTGCTTTGTGCATGGCTGCTGCCTCTAAGAAAGATCATAAAAGTGAGGGGAGAGAATTGGTTAGGATATTGCTTGCTGCAGGAGCGGATCCATCTGCTCAGGATTCACAGAATAGACGGACAGCTTTACATACAGCTGCTATGACTGATGATGTTGAATTGGTTAAGGTTATTCTTGCTGCTGGTGTTGATGTGAACATCCGCAATGTGCACAACAATATATCCCTTCACTTAGCCTTAGCTAGGGGAGCTAAGTCATGTGTTGGACTGCTTATATCTTCTGGGGCAGATTGTAATTTACAGGATGATGATGGTGATACTTCTTTCCATATAGCAGCAGAGACAGCGAAAATAATACGTGAAAATCTTGAATGGCTCATTGTTATGCTAAGGAAACCTAGTGCTGATGTTGAAGTCAGAAACCACAGTGGCAAGACTCTACATGACATCTTGGAGACCCTTCCCCGAGAATGGATATCTGAAGATCTGATGGAGGCACTCATGAATAGAGGAGTTCATCTCTCTCCTACAATATTTGAAGTGGGAGACTGGGTGAAGTTTAGAAGAACTTTCATAAATCCAATGAATGGGTGGGAAGGTGATCGGCAGAAGAGTGTTGGCTTTGTGCAAAGAGTTCCCGACAAAGATAATCTCGTTGTTTCATTTTGTTCTGGCGAGTATCATGTTTTGGCAAATGAAGTTGTAAAAGTCATCCCGTTAGACAGGGGACAACATGTACAACTTAAAGTAGATGTGAAAAATCCCAGATTTGGTTGGCCTGGGCAGTCACGTGACAACATTGGGACAGTATTATGTGTTGACGATGATGGGATCATCCGTGTTGGGTTTCCTGCACAATCTAAAGGATGGAAAGCTGACCCAGGAGAGGTCGAACGGGTTGAGGAATTCAAGGTGGGAGACTGGGTTCGTATTCGTCCCACTCTTACAACTGCGAAGTATGGATTAGGATCTGTGACACCAGGAAGCATTGGCATTGTATATTGTATCAGACCAGACAGTAGTCTGTTAATAGAACTGAGCTATCTTCCAATTCCATGGCATTGTGAACCAGAGGAGGTTGAGCATGTTGCTCCTTTTAGGATTGGTGATCGGGTATGCGTGCAGCGATCTGTTGCAGAACCTAGATATGCTTGGGGTAGCGAGACCCATCTTAGTGTTGGAAAAATAAGTGAGATTGGGAATGATGGCCTCTTAGTAATAGATATACCAAACCAACCCATTCCATGGCAAGCAGATCCGTCAGATATGGAGAAGGTGGAGGATTTTAAGGTGGTTGGAGATTGGGTCAGAATCAAAGCTTCAGTATATTCTCCAAGATATGGGTGGGAGGATATTCCAAGGAAAAACAGTATTGGGGTAATTCATAGCTTGGAGGAGGATGGCGATATGGGTGTTGCCTTTTGTTTCAGGAATAAGCTTTTTCCTTGCTCGATCACTGATGTAGAGAAAGTTCCCCATTTTGAGGTAGGGCAAGAAATTCATGTGATGTCATCTGTGACTCAGCCACAGCTTGGATGGTCAAATGAAACACCTGCTACGGTTGGAAAAATAGTAAGAATTGATATGGATGGTGCTCTCAATGTGAGGGTCACTGGTAGGCATAGCTTGTGGAAAGTTTCTCCTGGAGATGTGGAACAGCTTCTGGGATTTGAAGTTGGTGATTGGGTACGGTCAAAACCAAGTCTAGGGACCAAATCAAGTCCTGACTTAAATAGTTTTGGAAGTGAAAGTTTAGCTGTTGTGCATAGTGTTCAGGATTCTGGGTACTTGGAGTTGGCTTTTTGCTTCCATAAATTCAAGATGATGACTCATTATACAGAAGTTGAAAAGGTTCCTTGCTTTAAAGTCGGGCAATATGTAAGGTTCCGAACTGGTTTGTTGGAACCAAGGTGGGGCTGGAGGGGAACTCAGCCTGAATCTCGAGGTGTTGTAACCAACATTCATGCTAATGGAGAAGTGAGGGTGGCATTCTTTGGTTTGCTAGGATTGTGGCGAGGAGATCCTGCTGACTTGGAGATTGAACAGACATTTGAAGTGGGAGAATGGGTGAGGTTGAAAGATAACGCCACTGATTGGAAATCAATAGTGCCAGGTAGTGTTGGTGTTGTATTAGGAATAGACTATGAAGGGGATGAATGGAACGGAAGTACTTATGTTGCGTTTTGCGGGGAACAAGAAAGTTGGGTAGGACCAAGTTCTCATCTTGAAAGACTTCACAAACTCATTGTTGGACAGAAGGTTAGAGTTAAACTTTATGTGAAGCAACCAAGATTTGGGTGGTCAGGGCATACCTATACAAGTATTGGAACTATACAAGCCATTGATGCTGATGGAAAGCTTCGAATATACACTCCAGCGGGATCAAAAGCATGGATATTGGACCCATCAGAAGTGGAAGTGGTAGAACAGGAGGAGCGCTGTATTGGAGATTGGGTGAAGGTTAGAGCATCAGTTTTAACCCCAACCCACCAGTGGGGGGAAGTGAGTCATTCAAGCATAGGGGTGGTGTATCGGATGGAAGATGAGGATCTGTGGTTGGCTTTCTGTTTTATGGAGAGGCTATGGCTTTGTAAGGCATGGGAAATAGAAAAGGTTAGGACATTTAAAGTGGGGGATAATGTTAGGATCAAAGATGGATTAGTGAACCCAAGGTGGGGATGGGGAATGGAGACACATGCCAGTAAGGGACAAGTGGTAGGGGTAGATGCAAATGGCAAGCTAAGAATAAAGTTCCAGTGGAGGGAAGGGAGGCCCTGGGTCGGAGACCCTGCTGATATTGTCCTTGATGAGAATTGA 4833 0.4627 MKTRVPCCSICQTRYNEEERVPLMLQCGHGFCKECLSRIFSASPDTTLTCPRCRHVSTVGNSVQALPKNYAVIGLLRRPSPKAVRSVFDFNFDYTEDEDEDEEEDDVDVARRRSHVAQKSWSGRIGDLRLVKRIGEGRRSDVEMWTAVIGGRHKVAVKKVAVVGEVVEWMMEKLELLRRGSMWCRNVCTFHGAVKVDNCLCIVMDRCYGSLQSEMHRNEGRLTLEQVLRYGADIARGIAELHAAGIVCMNIKPSNLLLDPDGHAVVSDYGLAAILKKPSCWKAQPECDSSKTHSCMECTMLSPHYTAPEAWGEPVKKSLNLFRDDAIGISAESDAWSFGCTLVEMCTGSVPWAGLSSEEIHQAVVKAKNQPPQYASVVGGGIPRDLWKMIGECLQFKPSKRPSFSAMLAIFLRHLQEIPHSPPSSPDNDFVKSFASHVMELSPVPDLDVTQQSPSHLHRLVSAGDVRGVRDLLVKAASERGSNYISSLFEVQNIDGQTALHLACRRGCAKLVEAILEYPEANVDVLDKDGDPPLFFALATGSPECVHCLVKRNANVRSRLRDGFGPSIAHVCADHGQPDCMKELLLAGADPNAVDDDGESVLHRAVAKKYTDCALVILENGGSRSMAILNSKNLTPLHLCVASWNVAIVKRWVEVATSDEIAESIDIPSPIGTALCMAAASKKDHKSEGRELVRILLAAGADPSAQDSQNRRTALHTAAMTDDVELVKVILAAGVDVNIRNVHNNISLHLALARGAKSCVGLLISSGADCNLQDDDGDTSFHIAAETAKIIRENLEWLIVMLRKPSADVEVRNHSGKTLHDILETLPREWISEDLMEALMNRGVHLSPTIFEVGDWVKFRRTFINPMNGWEGDRQKSVGFVQRVPDKDNLVVSFCSGEYHVLANEVVKVIPLDRGQHVQLKVDVKNPRFGWPGQSRDNIGTVLCVDDDGIIRVGFPAQSKGWKADPGEVERVEEFKVGDWVRIRPTLTTAKYGLGSVTPGSIGIVYCIRPDSSLLIELSYLPIPWHCEPEEVEHVAPFRIGDRVCVQRSVAEPRYAWGSETHLSVGKISEIGNDGLLVIDIPNQPIPWQADPSDMEKVEDFKVVGDWVRIKASVYSPRYGWEDIPRKNSIGVIHSLEEDGDMGVAFCFRNKLFPCSITDVEKVPHFEVGQEIHVMSSVTQPQLGWSNETPATVGKIVRIDMDGALNVRVTGRHSLWKVSPGDVEQLLGFEVGDWVRSKPSLGTKSSPDLNSFGSESLAVVHSVQDSGYLELAFCFHKFKMMTHYTEVEKVPCFKVGQYVRFRTGLLEPRWGWRGTQPESRGVVTNIHANGEVRVAFFGLLGLWRGDPADLEIEQTFEVGEWVRLKDNATDWKSIVPGSVGVVLGIDYEGDEWNGSTYVAFCGEQESWVGPSSHLERLHKLIVGQKVRVKLYVKQPRFGWSGHTYTSIGTIQAIDADGKLRIYTPAGSKAWILDPSEVEVVEQEERCIGDWVKVRASVLTPTHQWGEVSHSSIGVVYRMEDEDLWLAFCFMERLWLCKAWEIEKVRTFKVGDNVRIKDGLVNPRWGWGMETHASKGQVVGVDANGKLRIKFQWREGRPWVGDPADIVLDEN 1610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2252g00003 1610 CDD STKc_PknB_like 186 409 - -
Gabi2252g00003 1610 FunFam E3 ubiquitin-protein ligase KEG 709 842 - -
Gabi2252g00003 1610 ProSiteProfiles Ankyrin repeat profile. 710 742 IPR002110 GO:0005515
Gabi2252g00003 1610 SUPERFAMILY RING/U-box 7 60 - -
Gabi2252g00003 1610 SMART ANK_2a 632 663 IPR002110 GO:0005515
Gabi2252g00003 1610 SMART ANK_2a 597 626 IPR002110 GO:0005515
Gabi2252g00003 1610 SMART ANK_2a 529 558 IPR002110 GO:0005515
Gabi2252g00003 1610 SMART ANK_2a 743 772 IPR002110 GO:0005515
Gabi2252g00003 1610 SMART ANK_2a 710 739 IPR002110 GO:0005515
Gabi2252g00003 1610 SMART ANK_2a 564 593 IPR002110 GO:0005515
Gabi2252g00003 1610 SMART ANK_2a 495 525 IPR002110 GO:0005515
Gabi2252g00003 1610 SMART ANK_2a 776 811 IPR002110 GO:0005515
Gabi2252g00003 1610 SMART ANK_2a 670 705 IPR002110 GO:0005515
Gabi2252g00003 1610 Gene3D - 711 841 IPR036770 -
Gabi2252g00003 1610 FunFam E3 ubiquitin-protein ligase KEG 435 665 - -
Gabi2252g00003 1610 Pfam RING-type zinc-finger 8 51 IPR027370 -
Gabi2252g00003 1610 Pfam Mind bomb SH3 repeat domain 975 1095 IPR040847 -
Gabi2252g00003 1610 Pfam Mind bomb SH3 repeat domain 1104 1223 IPR040847 -
Gabi2252g00003 1610 Pfam Mind bomb SH3 repeat domain 1487 1604 IPR040847 -
Gabi2252g00003 1610 Pfam Mind bomb SH3 repeat domain 1356 1477 IPR040847 -
Gabi2252g00003 1610 Pfam Mind bomb SH3 repeat domain 1229 1350 IPR040847 -
Gabi2252g00003 1610 Pfam Mind bomb SH3 repeat domain 851 969 IPR040847 -
Gabi2252g00003 1610 Gene3D - 449 561 IPR036770 -
Gabi2252g00003 1610 ProSiteProfiles Ankyrin repeat profile. 564 596 IPR002110 GO:0005515
Gabi2252g00003 1610 ProSiteProfiles Ankyrin repeat profile. 495 528 IPR002110 GO:0005515
Gabi2252g00003 1610 Pfam Protein kinase domain 130 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2252g00003 1610 ProSitePatterns Zinc finger RING-type signature. 27 36 IPR017907 -
Gabi2252g00003 1610 PRINTS Ankyrin repeat signature 496 511 IPR002110 GO:0005515
Gabi2252g00003 1610 PRINTS Ankyrin repeat signature 692 706 IPR002110 GO:0005515
Gabi2252g00003 1610 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 84 IPR013083 -
Gabi2252g00003 1610 ProSiteProfiles Ankyrin repeat profile. 743 775 IPR002110 GO:0005515
Gabi2252g00003 1610 ProSiteProfiles Ankyrin repeat region circular profile. 710 741 - -
Gabi2252g00003 1610 ProSiteProfiles Zinc finger RING-type profile. 8 54 IPR001841 -
Gabi2252g00003 1610 Gene3D Transferase(Phosphotransferase) domain 1 101 425 - -
Gabi2252g00003 1610 ProSiteProfiles Protein kinase domain profile. 128 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2252g00003 1610 PANTHER E3 UBIQUITIN-PROTEIN LIGASE KEG 4 1609 IPR044584 GO:0004842|GO:0006952|GO:0009738|GO:0016567
Gabi2252g00003 1610 SUPERFAMILY Protein kinase-like (PK-like) 120 425 IPR011009 -
Gabi2252g00003 1610 SUPERFAMILY Ankyrin repeat 492 818 IPR036770 -
Gabi2252g00003 1610 ProSiteProfiles Ankyrin repeat region circular profile. 495 517 - -
Gabi2252g00003 1610 ProSiteProfiles Ankyrin repeat region circular profile. 743 775 - -
Gabi2252g00003 1610 Gene3D - 562 710 IPR036770 -
Gabi2252g00003 1610 CDD RING-HC_KEG-like 5 61 - -
Gabi2252g00003 1610 Pfam Ankyrin repeats (3 copies) 689 774 IPR002110 GO:0005515
Gabi2252g00003 1610 Pfam Ankyrin repeats (3 copies) 483 557 IPR002110 GO:0005515
Gabi2252g00003 1610 Pfam Ankyrin repeats (3 copies) 570 650 IPR002110 GO:0005515
Gabi2252g00003 1610 SMART ring_2 8 53 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2252g00003 Gabi-Chr2252 125910 163996 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2252g00003 144 420 MAP Kinase Kinase Kinase AT4G18950 27.465 8.11e-19 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-1 Gabi2252g00003 Pkinase 1.9e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2252g00003 K16279 - gmx:100783181 2692.53