Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2252g00001 ATGTCTGAGACAAAGATGGATGATGCAATGGAAAGTAGTGAAAGACCTATTTTCAGAGATATTAGACGCTATTCCTGTCAATACTGTGGCATGTCCAGGTCTAAGAAGACCCTTATTACCTCTCATATCAATTCTCACCACAAGGAGGAGGCGGAAAAAGCAGGACTCCAAAGAGATCAGGAATCGGAGGGTATAAAATTGAATACATGTAAGGAATGTGGTGCTAGATTCAAAAAACCTGCCTACCTATTGCAGCACATGCAAAGCCATTCACTTGAGAGGCCGTATATTTGTACTGTTGATGATTGTCAGGCAAGTTACAGAAGAAAGGACCACTTGACTCGTCATCTTCTACAGCATAAAGGGAAAACTTTTACATGTCCAATTGAGAATTGCAGCTGTGATTTTGCTTTCAAGGGAAATATGACAAGACATGTCAAGGAGTTTCATAACAAGAATTCTGCCTCTACAGGTGTTAAAAATCAGAAGCAATATGTGTGCCCAGAAATTGGCTGTGGCAAGGTTTTCAAATTTGCTTCAAAGCTACAGAAGCATGAAGATTCTCATGTTAAGCTGGAGTCAATAGAGGTAGTGTGCTTATATCCTGGTTGCATGAAGCATTTCACTAATGTCCAGTGCCTTAGAGTCCATACTAAATCCTGCCATCAATATGTGACCTGTGAAACTTGTGGGAAAAAGCAACTGAAGAAGAACATTAAAAGGCATCTCTGTAAGCATGAAACTGGTAGTTCATCAGAGGTGTTTCATTGTGAAAATAAGGGTTGTAGCAGCACATTCTCAAATAAATCCAATCTTCGTAAGCATGTGAAGGCTGTGCACTTGCAAAACAAACCTTTTATGTGTGGCTTCCCCGATTGTGGCATGAGATTTGCTTATAAGCATGTGAGAGATAACCATGAAAAATCTGGTTCACATGTTTTTACCCTTGGGGATTTTGAAGAATCTGATGAACAATTCAGGTCAAGGGCAATGGGAGGGAGGAAGAGGAAGTTTCCTACGGTTGAAATGTTAGTTAGGAAGAGAGTTGCTCCACCAAGTCAACTGGAGTTGATCATGAAGGGTAGTGAAGAGATGTATTGA 1101 0.4042 MSETKMDDAMESSERPIFRDIRRYSCQYCGMSRSKKTLITSHINSHHKEEAEKAGLQRDQESEGIKLNTCKECGARFKKPAYLLQHMQSHSLERPYICTVDDCQASYRRKDHLTRHLLQHKGKTFTCPIENCSCDFAFKGNMTRHVKEFHNKNSASTGVKNQKQYVCPEIGCGKVFKFASKLQKHEDSHVKLESIEVVCLYPGCMKHFTNVQCLRVHTKSCHQYVTCETCGKKQLKKNIKRHLCKHETGSSSEVFHCENKGCSSTFSNKSNLRKHVKAVHLQNKPFMCGFPDCGMRFAYKHVRDNHEKSGSHVFTLGDFEESDEQFRSRAMGGRKRKFPTVEMLVRKRVAPPSQLELIMKGSEEMY 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2252g00001 366 Gene3D Classic Zinc Finger 159 190 - -
Gabi2252g00001 366 Gene3D Classic Zinc Finger 97 158 - -
Gabi2252g00001 366 SUPERFAMILY beta-beta-alpha zinc fingers 123 152 IPR036236 -
Gabi2252g00001 366 ProSitePatterns Zinc finger C2H2 type domain signature. 127 150 IPR013087 -
Gabi2252g00001 366 ProSiteProfiles Zinc finger C2H2 type domain profile. 165 194 IPR013087 -
Gabi2252g00001 366 ProSitePatterns Zinc finger C2H2 type domain signature. 70 90 IPR013087 -
Gabi2252g00001 366 PANTHER ZINC FINGER PROTEIN 10 363 - -
Gabi2252g00001 366 SUPERFAMILY beta-beta-alpha zinc fingers 67 120 IPR036236 -
Gabi2252g00001 366 Pfam Zinc finger, C2H2 type 255 280 IPR013087 -
Gabi2252g00001 366 Pfam Zinc finger, C2H2 type 69 90 IPR013087 -
Gabi2252g00001 366 Pfam Zinc finger, C2H2 type 165 189 IPR013087 -
Gabi2252g00001 366 Pfam Zinc finger, C2H2 type 96 120 IPR013087 -
Gabi2252g00001 366 SUPERFAMILY beta-beta-alpha zinc fingers 238 294 IPR036236 -
Gabi2252g00001 366 ProSitePatterns Zinc finger C2H2 type domain signature. 98 120 IPR013087 -
Gabi2252g00001 366 ProSiteProfiles Zinc finger C2H2 type domain profile. 24 51 IPR013087 -
Gabi2252g00001 366 ProSiteProfiles Zinc finger C2H2 type domain profile. 96 125 IPR013087 -
Gabi2252g00001 366 ProSiteProfiles Zinc finger C2H2 type domain profile. 255 285 IPR013087 -
Gabi2252g00001 366 SMART c2h2final6 225 246 IPR013087 -
Gabi2252g00001 366 SMART c2h2final6 255 280 IPR013087 -
Gabi2252g00001 366 SMART c2h2final6 165 189 IPR013087 -
Gabi2252g00001 366 SMART c2h2final6 24 46 IPR013087 -
Gabi2252g00001 366 SMART c2h2final6 68 90 IPR013087 -
Gabi2252g00001 366 SMART c2h2final6 96 120 IPR013087 -
Gabi2252g00001 366 SMART c2h2final6 197 222 IPR013087 -
Gabi2252g00001 366 SMART c2h2final6 125 150 IPR013087 -
Gabi2252g00001 366 SMART c2h2final6 286 312 IPR013087 -
Gabi2252g00001 366 ProSiteProfiles Zinc finger C2H2 type domain profile. 125 155 IPR013087 -
Gabi2252g00001 366 ProSitePatterns Zinc finger C2H2 type domain signature. 288 312 IPR013087 -
Gabi2252g00001 366 Gene3D Classic Zinc Finger 250 326 - -
Gabi2252g00001 366 ProSitePatterns Zinc finger C2H2 type domain signature. 199 222 IPR013087 -
Gabi2252g00001 366 ProSitePatterns Zinc finger C2H2 type domain signature. 167 189 IPR013087 -
Gabi2252g00001 366 Gene3D Classic Zinc Finger 11 96 - -
Gabi2252g00001 366 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 95 IPR013087 -
Gabi2252g00001 366 SUPERFAMILY beta-beta-alpha zinc fingers 161 190 IPR036236 -
Gabi2252g00001 366 ProSitePatterns Zinc finger C2H2 type domain signature. 257 280 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2252g00001 Gabi-Chr2252 89734 93636 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2252g00001 92 315 C2H2 Transcription Factor Family AT1G72050 51.449 5.38e-92 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi2252g00001 zf-C2H2 0.013 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2252g00001 K09191 - qsa:O6P43_029707 558.91