Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2251g00037 ATGGAAGCACCAGAGGAACTCTCTTTGGGTTCCAAAGAGCATACCAACATTGTCAAAGGGAAAAGAACCAAAAGGGTAAGGCCACAATCCCCTATCCCCTTCTCCATCACTGCTAATTCTTCAACGGGAGAAGGAGAAAGGGAAGATTGCTACAATAGAGATGACACCACCACCAACAACAACAACAACAACAACAAGAAGGATTATAATGATAATGATAATAACAATAACAACAGCACCCCCACCACTTCTTCTGCAGGATTACATGATAGCACAGATGAAGAGGAGGATATGGCAAATTGCTTGATCCTTCTAGCACAAGGACAATCAAGGGAATCTCCAAAACAAGCCGAGGAAGATAGTTCCATGAACTACACCAAGTATAGCAGTAGAAAATTCTTGGAAGCTGCAACCTTGGGGTCTAGCAGGGCAGGGTATTATGTATATGAATGCAAGACATGTAACAAAACTTTCCCTTCATTTCAAGCACTTGGAGGACACAGGGCTAGTCACAAGAAGCCTAAGAACATGGCTGCAATGGTCATTGCTCAAGAAAAGAAGCAACTTTTGTTGTCAGCAGATGAGGAAGAGTTTCAATTCATCAAGACCAATAAATCACTTTCCCTTCAATTGAATAGCAGGGGGAATTTGTATACCAATAACAACAAGTCCAAGGTGCATGAGTGTTCTGTTTGTGGTGCTGAATTCACATCAGGACAGGCACTCGGTGGCCATATGAGACGCCACCGTGCACCGGTGGGGACCAACACCACACTCTCTTTGACCCCAATGGCTTTGGAACCAGAAGAAGATCAACCCAGAAAGAGAAGAAATGTGCTGAATTTGGATTTGGATCTCAACCTTCCTGCCCCAGAAGATGATCATCAAAGAGAATCCAAGTTTGCCTTTGCATCCAAGCAACAACAACAACAACAACAACAACATGGGCAGCAACAACAACAACATGGGCAGAAACAACAACAACAACAAACAAATCTTGTCTTCTCCGCCCCAACTTTGGTGGATTGTCATTACTAA 1038 0.4335 MEAPEELSLGSKEHTNIVKGKRTKRVRPQSPIPFSITANSSTGEGEREDCYNRDDTTTNNNNNNNKKDYNDNDNNNNNSTPTTSSAGLHDSTDEEEDMANCLILLAQGQSRESPKQAEEDSSMNYTKYSSRKFLEAATLGSSRAGYYVYECKTCNKTFPSFQALGGHRASHKKPKNMAAMVIAQEKKQLLLSADEEEFQFIKTNKSLSLQLNSRGNLYTNNNKSKVHECSVCGAEFTSGQALGGHMRRHRAPVGTNTTLSLTPMALEPEEDQPRKRRNVLNLDLDLNLPAPEDDHQRESKFAFASKQQQQQQQQHGQQQQQHGQKQQQQQTNLVFSAPTLVDCHY 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2251g00037 345 ProSitePatterns Zinc finger C2H2 type domain signature. 151 171 IPR013087 -
Gabi2251g00037 345 Pfam C2H2-type zinc finger 226 252 - -
Gabi2251g00037 345 Pfam C2H2-type zinc finger 148 174 - -
Gabi2251g00037 345 Gene3D Classic Zinc Finger 124 208 - -
Gabi2251g00037 345 Gene3D Classic Zinc Finger 216 261 - -
Gabi2251g00037 345 PANTHER ZINC FINGER PROTEIN ZAT5 79 311 - -
Gabi2251g00037 345 ProSitePatterns Zinc finger C2H2 type domain signature. 229 249 IPR013087 -
Gabi2251g00037 345 MobiDBLite consensus disorder prediction 302 331 - -
Gabi2251g00037 345 MobiDBLite consensus disorder prediction 242 331 - -
Gabi2251g00037 345 MobiDBLite consensus disorder prediction 30 45 - -
Gabi2251g00037 345 ProSiteProfiles Zinc finger C2H2 type domain profile. 227 249 IPR013087 -
Gabi2251g00037 345 SMART c2h2final6 227 249 IPR013087 -
Gabi2251g00037 345 SMART c2h2final6 149 171 IPR013087 -
Gabi2251g00037 345 SUPERFAMILY beta-beta-alpha zinc fingers 148 249 IPR036236 -
Gabi2251g00037 345 MobiDBLite consensus disorder prediction 1 94 - -
Gabi2251g00037 345 ProSiteProfiles Zinc finger C2H2 type domain profile. 149 176 IPR013087 -
Gabi2251g00037 345 MobiDBLite consensus disorder prediction 55 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2251g00037 Gabi-Chr2251 287175 288212 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2251g00037 1 345 C2H2 Transcription Factor Family AT5G04390 45.093 1.12e-85 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi2251g00037 zf-C2H2_6 4.4e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2251g00037 - - lja:Lj5g3v1698890.1 454.136