Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2251g00013 ATGAACAGCACTTCCAATTCTGATAACCCTTCTGAGGACTCAAACACATATGCATATTACTCTGTTGGAATATCCCTTGCCTTTCTCCTTCTGATGATGTTCATAGCTCTCACTGCATATTACTGTAGCCATAGAAATTTGCAAAACATGCAATCTAGACCCATTGGCAGCAGCAGAAGCAGTTCTAATAGGACAGTGATCATGGATAGAGATTCTGCTATAACAATCCAAGTTGGTGAGGAAGAACAAGAAGCAATCCTGAACAGTTACCCCATGTTGTTGTACTCTCAAGCAAAGCTTCATAAGCCTGATTCAACATCACTCAGCTGCTCAATATGCTTAGCAGATTACAAGGATTCAGAGGGGTTGCGTCTCTTACCTGAATGTGGTCACTTTTTTCATAAGGAGTGCATTGACATGTGGTTGAGGCTAACACTCTCATGTCCCGTGTGTCGAAACTCGCCATTACCAACTCCTCTTCCAACTCCACTTGCTGAAGTTGCTCCCTTGTCAACAAGACGTGATTGA 528 0.428 MNSTSNSDNPSEDSNTYAYYSVGISLAFLLLMMFIALTAYYCSHRNLQNMQSRPIGSSRSSSNRTVIMDRDSAITIQVGEEEQEAILNSYPMLLYSQAKLHKPDSTSLSCSICLADYKDSEGLRLLPECGHFFHKECIDMWLRLTLSCPVCRNSPLPTPLPTPLAEVAPLSTRRD 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2251g00013 175 FunFam E3 ubiquitin-protein ligase ATL6 72 157 - -
Gabi2251g00013 175 SMART ring_2 110 151 IPR001841 -
Gabi2251g00013 175 CDD RING-H2_EL5-like 109 152 - -
Gabi2251g00013 175 SUPERFAMILY RING/U-box 86 157 - -
Gabi2251g00013 175 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 156 IPR013083 -
Gabi2251g00013 175 ProSiteProfiles Zinc finger RING-type profile. 110 152 IPR001841 -
Gabi2251g00013 175 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 166 IPR045899 -
Gabi2251g00013 175 SMART ringv_2 109 152 IPR011016 GO:0008270
Gabi2251g00013 175 Pfam Ring finger domain 109 152 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2251g00013 Gabi-Chr2251 79968 80495 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2251g00013 20 173 C3H Transcription Factor Family AT5G06490 38.095 2.35e-36 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2251g00013 - - adu:107466513 202.601