Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2251g00009 ATGATCAATGGAACCTTGGGAACCAACAACAACAACGGGGATATTGATGCAAGTGGGATAACATATGGCATAGCATTTGTAGTTGGGATAATGTTCACAATTTTCACAATAGCTTTTGCGTGTGTGAGGCTTCGAATTCGAATGACTCGCACCACCAACATACTAAGTGTTTTGGCTGGTATTTCACCATCTCATCATCAAGCAGGAGAATTAGGCTTAGTTGAAGATATGCAACAAGGTCATAATCATAATCATGATATTGACACAAGTTTTGATAGCTACCCCAAGTTGTTATACTCAGAAGTAGAGAAGAATAAAGATGGTTATTCAAGCTGCTCCATCTGCTTAGGGGATTACAAAGAAACTGACATGTTGAGGTTACTTCCTGATTGTGGCCATCTCTACCATCATGATTGTGTTGATCCATGGCTCAGGTTACATTCCACATGTCCCATATGTCGAAAATCTTTGGTTCAAACTCCTCGCTCTAGTGCCTCCAATGTTGGGGAATCCACTACTATCCCTGTTGTGTAG 534 0.4082 MINGTLGTNNNNGDIDASGITYGIAFVVGIMFTIFTIAFACVRLRIRMTRTTNILSVLAGISPSHHQAGELGLVEDMQQGHNHNHDIDTSFDSYPKLLYSEVEKNKDGYSSCSICLGDYKETDMLRLLPDCGHLYHHDCVDPWLRLHSTCPICRKSLVQTPRSSASNVGESTTIPVV 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2251g00009 177 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 159 IPR013083 -
Gabi2251g00009 177 ProSiteProfiles Zinc finger RING-type profile. 112 154 IPR001841 -
Gabi2251g00009 177 SUPERFAMILY RING/U-box 92 160 - -
Gabi2251g00009 177 SMART ring_2 112 153 IPR001841 -
Gabi2251g00009 177 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 14 164 IPR045899 -
Gabi2251g00009 177 Pfam Ring finger domain 111 154 IPR001841 -
Gabi2251g00009 177 CDD RING-H2_PA-TM-RING 111 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2251g00009 Gabi-Chr2251 47517 48403 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2251g00009 19 161 C3H Transcription Factor Family AT5G06490 36.471 5.41e-28 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2251g00009 - - gmx:102663718 172.17