Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2248g00014 ATGGCAGCTTTTGTATTAACTGTGTCACAGGACGGAACCGGACACTACCGGACGGTGCAGGAAGCCATTGATGCCGTGCCACTCCGAAACTCTCGCCGGACGGTGATCCGGGTGTCGCCGGGAATCTATAAACAGCCAGTGTACGTGGCCAAGACCAAGAATTTCATCACCCTCGTTGGTATGAGCCCAGAGGACACTGTTCTCGCGTGGAACAACACTGCTACCAGAATTGAACACCACCAAGGTTCTCGGGTGGTAGGGACTGGGACCTTTGGTTGTGGTAGCACCATTGTGGAAGGGGAGGACTTTATTGCTGAGAATATTACGTTTGAGAACTCTTCCCCTGAGGGCTCAGGGCAAGCAGTGGCAATTAGAGTAACAGCAGATCGATGTGCATTCTATAATTGCAGGTTCCTTGGATGGCAGGACACACTGTATTTACATCGTGGCAAACAGTATCTAAAAGATTGTTATATTGAAGGAAGTGTGGACTTTATTTTTGGTAATAGCACTGCGCTTTTGGAGCATTGTCATATCCACTGCAAGTCTGCAGGGTTCATAACTGCACAGAGCAGAAACTCTCCACAGGAAACAACTGGTTATGTATTCTTGAGATGTGTTATCACAGGTAATGGAGGAACTTCATATGCATATCTTGGAAGACCATGGGGGCCTTTTGGAAGAGTGTTCTTTGCATTCACTTATATGGATCAATGTATAAAGCCTGTTGGCTGGAACAATTGGGGGAAGATTGAGAATGAAAGAAGTGCTTGCTTTTATGAATACAGGTGTTTTGGACCGGGTTGCTGTCCATCTGAACGGGTAAAATGGGCTAGAGAATTAATGAATGAAGAAGCAGAAAAGTTTCTGATGCATGGCTTCATTGACCCAGAACCAAAGAGACCTTGGCTTGCTCAAAGAATGGCCTTGAGGATTCCATATTCTGCTTAG 951 0.4606 MAAFVLTVSQDGTGHYRTVQEAIDAVPLRNSRRTVIRVSPGIYKQPVYVAKTKNFITLVGMSPEDTVLAWNNTATRIEHHQGSRVVGTGTFGCGSTIVEGEDFIAENITFENSSPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHRGKQYLKDCYIEGSVDFIFGNSTALLEHCHIHCKSAGFITAQSRNSPQETTGYVFLRCVITGNGGTSYAYLGRPWGPFGRVFFAFTYMDQCIKPVGWNNWGKIENERSACFYEYRCFGPGCCPSERVKWARELMNEEAEKFLMHGFIDPEPKRPWLAQRMALRIPYSA 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2248g00014 316 Gene3D - 3 309 IPR012334 -
Gabi2248g00014 316 FunFam Pectinesterase 2 309 - -
Gabi2248g00014 316 Pfam Pectinesterase 7 296 IPR000070 GO:0030599|GO:0042545
Gabi2248g00014 316 SUPERFAMILY Pectin lyase-like 2 301 IPR011050 -
Gabi2248g00014 316 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 5 298 - -
Gabi2248g00014 316 ProSitePatterns Pectinesterase signature 2. 159 168 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2248g00014 Gabi-Chr2248 269226 279944 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2248g00014 5 309 Carbohydrate Esterase AT5G47500 36.741 1.08e-68 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2248g00014 K01051 - qsa:O6P43_004451 592.423