Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2246g00013 ATGGCTGAAATAGCGGTGAACCTGGTGATGGACAAGTTGATTCCATTACTGAGGTATGAAGTGGGAGAACTGAAAAAGGTGCACACGCAGGTGACGTTCATCAAAGATCAACTAGGCCTAATAAGAGCATACTTGAGAGATGCAGATGTGAAGGCTGCAGAGAAAGAAGACAAAAGCCACGTAGTGAAAGAGTGGGTGAAGCAAGTGAGGGAAGTTGCACATCGCATAGAAGATGCCATCGATGAGTACTTGCTCCAAGTTGCACAGCGTCGCCAAAAGCGTGGCATGGCTGGTGTAGTTGAGAAAATAGTTAGGCTGCTCAGAAGCATAGAACCACGCCATTCGATTACGTCACAGATTCGTGATATCAACACTACGATAGAAACCCTTGACAAAAGGAAAGACACGTTGGGGTTCAACCCTTCTTCTGGTTCAGAATCATCCACTAGTTCTCTTCATCACGGTCATGACCTTCGAGAGGGTGCTCTTTTCCTTGAGGATGCACAGCTTGTCGGAATCAATGATACAAGAAAGAAACTCAAAAGCTTGCTGCTTGATGAAGATAGCAGACGCACCGTCATCGCTTTGGTTGGCACAGGCGGGATTGGTAAAACAACAATTGCAAAGAAACTATTTGAGAAGCAGAAGCATAAGAGGTTCACTTGTGGCGCATGGGTGTGTGTGTCAAGCACATTCAAGGAGAAAAAGATACTGAGGTCAATGTTGCAGAGCTTTTATGATAAGGACGAAGACGATGACTGTCAGACCAAGTTGATTGAACAAATGAACAAGGTCACCCTGAAAAGAAAAGTGAGAGAACACTTGCAAGAAAATAGCTACATGATTGTATTTGACGATGTTTGGGAAGAAGATTTTTGGGGGCGTGTGGAATATGCATTACCAGAGAACAACAAAAGGAGTAGGGTAATGATCACAACAAGACACAAGGGTGTTGCTGAGTTTTGCAAACGTTCTGCACATGTTCATATCCACGAGTTGCAGCGTCTATGTCCAAGGGACGCTATGGATCTGTTCAATCTGAAGGCATTTCATCAGCTCAAGCCAGAAGGGTGTTCAACAGAGTTGATGAAATTGTCAGAAGACATCTTGAAGAAGTGTGATGGAGTGCCACTCGCAATTGTGGCCATTGCTAGCCTCCTTTCCACAAAAAACAACAACTTTTCTGAATGGATGAAGGTTCATGATAGTTTTGGTTCAAAACTAGCTAGTGATCCTCATCTCAAAAGCTTCCATCGAGCCTTATCAGAAAGTTACAATGATCTCCCTTTCCACCTAAAACCATGCCTCTTGTATTTTGGCGTTTTCCCTGATGACTACTCCATTAGCTCCAAGAGACTTATACGTCTATGGATAGCAGAAGGATTGGTGAATGTAAAAGAGAATGAAAACCGAACCCAAGAGGAAGTTGCAGAAGAATACTTGGATGAATTGATACGTAGGAGTTTAGTTACAGTGTCCTCTAAGTCTATTTATGGCGGGGCCAGAAGACTTAGGGTGCATGATCTGTTGCATGACTTTATTGCGGACAAGTGTGTGGAGTTGGACTTTTGCCAAGTGATAAAAAGTGAAAACTTCGCATTCAATTCAACAACTCGACGATTGTCAATCCAATTTCAAGGTAGCGGAGAAGATGCTGTTCTCGCAAGAGCTGTTGCAGCAAATCATGACCGAGTGCGCTTTTGTTTTGCTTTTAACTTGGAGGAGCTCCCAAGGCCTATGTTGAAATCATTCCTCTCCAATTTCAAGCTCTTGGTTGGATTAGACTTTGAAGATTCCCCTCTCGAAGATCTTCCTGAACCGGTTGGAAACTTGTTGCATTTGAAGTATTTGAACTTAAGGAATACTAGAATCAAGAATCTTCCAAAGTTCATTGGCAAGCTTCAGAACCTACTGACACTGGACCTGAAATATACTCAAGTGCGTGAATTACCTATAGAGGTTAACAAACTCACCAAGCTGCACCATCTTGTAGCTTATTCTGGCAACGAGGAAATCGATTTCAGTACAGCATCCATGCAAGGAGTTGTGATAAAGGAAGGGATTGGGCGTCTAAAGGCCCTGCAGATACTTTTGAAGGTTGATATGACTAATGGGGATAGCCTAATCAAGGAAGTGAAAAATTTGAAGCAGTTGAGGGAATTTGGCATTATCAAGCTAAGAAGACACAATGGAAAACCATTATGTAGTGCAATTGAAGGCATGATGCGTCTTCAGGCACTGAGCATTGCAGCAGCAGAAGAGAATGAGATTCTTGACCTGCATTCATTGGTTAATCCTCCTCACCAACATCTCCAACGCCTGTATTTGTATGGCCGATTGGAAACAGTGCCTCTTTGGATTCCAAAACTTCATGTTCTGGTAAGGTTATTCTTGAATTGGTCAGGACTAACGGAAGATCCACTACCAATGCTCAAAGACTTGACAGAGTTAATGGAGCTTGAGCTTTACAGTGCATTTGAAGGTGTTGAGTTGTGTTTTGGAGACGGGTGGTTCAAAAAGTTGAAGGTATTAAGCCTAGAAAAGATGCAAGCCTTGAAGACCTTGAAAATTCATAAGGGAGCATTGCCTATTCTTCAAAAGCTAACCATTGGGCCGTGCCCTCATATGGTGGAGGTTCCCCATGATATCCAAAACCTACAGGCTCTCCAACATCTTCGATTCTATGAAATGCCTACGGACTCAACAGAAGGAAAGGACCATGGGATATTGAAGGACATACCATTTGTGATTTACTCCAAGGGCAACAAATTCTACACCCTTCATAAGCTTCATTCTTCAGCATGGCCTTTAGCTCCTGCGGATATATTTGGAAAGCTTATTCTCAATTACAAAATGAAGGGTGTTGTTCTGCCTTGTGCAGATGTGTCTGACCAATTAAAAAGAGATGAAAATAACAAGTGGTGCCATGTACCTGGACTTCCTAAGTTGTTCTACAACAAACTACGTTCGCCAATAATTTTGTGGCATGACATTTGGGTA 3000 0.427 MAEIAVNLVMDKLIPLLRYEVGELKKVHTQVTFIKDQLGLIRAYLRDADVKAAEKEDKSHVVKEWVKQVREVAHRIEDAIDEYLLQVAQRRQKRGMAGVVEKIVRLLRSIEPRHSITSQIRDINTTIETLDKRKDTLGFNPSSGSESSTSSLHHGHDLREGALFLEDAQLVGINDTRKKLKSLLLDEDSRRTVIALVGTGGIGKTTIAKKLFEKQKHKRFTCGAWVCVSSTFKEKKILRSMLQSFYDKDEDDDCQTKLIEQMNKVTLKRKVREHLQENSYMIVFDDVWEEDFWGRVEYALPENNKRSRVMITTRHKGVAEFCKRSAHVHIHELQRLCPRDAMDLFNLKAFHQLKPEGCSTELMKLSEDILKKCDGVPLAIVAIASLLSTKNNNFSEWMKVHDSFGSKLASDPHLKSFHRALSESYNDLPFHLKPCLLYFGVFPDDYSISSKRLIRLWIAEGLVNVKENENRTQEEVAEEYLDELIRRSLVTVSSKSIYGGARRLRVHDLLHDFIADKCVELDFCQVIKSENFAFNSTTRRLSIQFQGSGEDAVLARAVAANHDRVRFCFAFNLEELPRPMLKSFLSNFKLLVGLDFEDSPLEDLPEPVGNLLHLKYLNLRNTRIKNLPKFIGKLQNLLTLDLKYTQVRELPIEVNKLTKLHHLVAYSGNEEIDFSTASMQGVVIKEGIGRLKALQILLKVDMTNGDSLIKEVKNLKQLREFGIIKLRRHNGKPLCSAIEGMMRLQALSIAAAEENEILDLHSLVNPPHQHLQRLYLYGRLETVPLWIPKLHVLVRLFLNWSGLTEDPLPMLKDLTELMELELYSAFEGVELCFGDGWFKKLKVLSLEKMQALKTLKIHKGALPILQKLTIGPCPHMVEVPHDIQNLQALQHLRFYEMPTDSTEGKDHGILKDIPFVIYSKGNKFYTLHKLHSSAWPLAPADIFGKLILNYKMKGVVLPCADVSDQLKRDENNKWCHVPGLPKLFYNKLRSPIILWHDIWV 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2246g00013 1000 Coils Coil 463 483 - -
Gabi2246g00013 1000 Pfam Rx N-terminal domain 5 94 IPR041118 -
Gabi2246g00013 1000 Gene3D - 424 518 IPR036388 -
Gabi2246g00013 1000 MobiDBLite consensus disorder prediction 136 151 - -
Gabi2246g00013 1000 Gene3D - 161 329 IPR027417 -
Gabi2246g00013 1000 PRINTS Disease resistance protein signature 373 387 - -
Gabi2246g00013 1000 PRINTS Disease resistance protein signature 193 208 - -
Gabi2246g00013 1000 PRINTS Disease resistance protein signature 632 648 - -
Gabi2246g00013 1000 PRINTS Disease resistance protein signature 274 288 - -
Gabi2246g00013 1000 SUPERFAMILY L domain-like 506 901 - -
Gabi2246g00013 1000 Gene3D - 4 117 - -
Gabi2246g00013 1000 FunFam Probable disease resistance protein At1g63360 425 516 - -
Gabi2246g00013 1000 Gene3D Ribonuclease Inhibitor 555 910 IPR032675 -
Gabi2246g00013 1000 CDD RX-CC_like 2 127 IPR038005 -
Gabi2246g00013 1000 MobiDBLite consensus disorder prediction 134 154 - -
Gabi2246g00013 1000 Gene3D - 336 423 IPR042197 -
Gabi2246g00013 1000 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 157 439 IPR027417 -
Gabi2246g00013 1000 PANTHER DISEASE RESISTANCE PROTEIN RP 60 870 IPR044974 GO:0006952
Gabi2246g00013 1000 FunFam Probable disease resistance protein At1g61300 156 327 - -
Gabi2246g00013 1000 Pfam NB-ARC domain 178 426 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2246g00013 Gabi-Chr2246 257782 265900 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2246g00013 194 380 WRKY Transcription Factor Family AT5G45050 26.702 2.85e-07 52.8