Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2246g00011 ATGGATGCTAAATCTGCTGTAGATCTAATGGAGTCTTCCTCTGAGGTTCATTTTTCTGGATTTCACATGGATGGTTTTGAGCAAAGAAAGGCTAGCACAGAACAACCGACAACATCAGATACTGAAATGTATAAACAACCTTTTGTCATAGGTGTTGCTGGGGGTGCAGCATCTGGAAAGACAACAGTTTGTGATAAGATTATTCAGCAGCTTCATGATCAACGGGTTGTACTTGTTAATCAGGATTCTTTTTATAATAACTTGACTGAGGAGGAACTTAAAAGAGTACAGGATTACAACTTTGACCATCCTGATGCTTTTGATACTGAGCAATTGCTCGATGTTATGGACAAGTTGAAGTGTGGCGAATCAGTAGATATTCCGAAGTATGATTTTAAGAGTTACAAGAGTCATGTGTTAAGAAGGGTAAACCCTTCAGATGTTATAATTTTGGAAGGCATCCTCGTTTTCCATGATCCACGTGTTCGGGGGTTGATGAATATGAAGATATTTGTTGACACAGATGCTGATGTTCGTTTGGCAAGAAGGATTAGGCGTGATACTGCTGAGAAGGGTCGGGACATTGCAGCAGTTCTTGATCAGTATTCAAAATTTGTGAAGCCAGCTTTTGATGACTTTATTCTTCCAACAAAGAAGTATGCTGATATAATTATACCCCGTGGAGGAGATAATCATGTGGCCATTGATTTGATTGTTCAGCATATCCGCACTAAGCTTGGTCAGCATGACCTGTGTAAAATATATCCAAATTTATACGTCATTCATTCAACTTTTCAGATACGGGGTATGCATACCCTGATACGTGATGCACAGACAACAAAGCATGATTTTGTATTTTATTCTGATCGTTTGATTCGTTTGGTTGTAGAACATGGCTTGGGGCATCTGCCATTTACAGAGAAGCAAGTAGTCACCCCCACTGGTTCTGTATACACCGGTGTGGATTTTTGTAAGAGGTTGTGTGGTGTCTCTGTCATCAGGAGTGGGGAGAGTATGGAGAATGCTTTACGAGCATGCTGTAAAGGTATCAAGATTGGGAAAATTCTAATTCACAGAGAAGGTGACAATGGTCAACAGCTAATATATGAAAAGTTGCCAAATGATATCTCAGATAGGCATGTCTTACTGTTGGACCCTATCCTTGGCACAGGTAATTCGGCTGTTCAAGCAATTTCTTTACTTATAAGAAAGGGTGTACCGGAGTCAAATATCATCTTTCTTAATCTCATATCTGCACCTAAAGGTGTGCATGTGGTCTGCAAATGTTTTCCAAGAATAAAAATAGTGACATCTGAGATTGAGATTGGTTTGAATGAAGATTTCCGTGTCATACCAGGCATGGGAGAGTTTGGAGATAGGTACTTTGGAACAGATGATGATAATGAGCAAGTGGTGGTTCCTTCACAGTAG 1431 0.399 MDAKSAVDLMESSSEVHFSGFHMDGFEQRKASTEQPTTSDTEMYKQPFVIGVAGGAASGKTTVCDKIIQQLHDQRVVLVNQDSFYNNLTEEELKRVQDYNFDHPDAFDTEQLLDVMDKLKCGESVDIPKYDFKSYKSHVLRRVNPSDVIILEGILVFHDPRVRGLMNMKIFVDTDADVRLARRIRRDTAEKGRDIAAVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNLYVIHSTFQIRGMHTLIRDAQTTKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSVYTGVDFCKRLCGVSVIRSGESMENALRACCKGIKIGKILIHREGDNGQQLIYEKLPNDISDRHVLLLDPILGTGNSAVQAISLLIRKGVPESNIIFLNLISAPKGVHVVCKCFPRIKIVTSEIEIGLNEDFRVIPGMGEFGDRYFGTDDDNEQVVVPSQ 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2246g00011 476 Gene3D - 249 464 IPR029057 -
Gabi2246g00011 476 FunFam Uridine kinase 249 464 - -
Gabi2246g00011 476 NCBIfam uridine kinase 45 245 IPR000764 -
Gabi2246g00011 476 Gene3D - 43 248 IPR027417 -
Gabi2246g00011 476 PRINTS Uridine kinase signature 47 64 - -
Gabi2246g00011 476 PRINTS Uridine kinase signature 177 187 - -
Gabi2246g00011 476 PRINTS Uridine kinase signature 213 226 - -
Gabi2246g00011 476 PRINTS Uridine kinase signature 122 137 - -
Gabi2246g00011 476 PRINTS Uridine kinase signature 191 202 - -
Gabi2246g00011 476 PRINTS Uridine kinase signature 77 88 - -
Gabi2246g00011 476 PANTHER URIDINE KINASE 37 374 - -
Gabi2246g00011 476 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 43 238 IPR027417 -
Gabi2246g00011 476 Pfam Phosphoribulokinase / Uridine kinase family 49 233 IPR006083 GO:0005524|GO:0016301
Gabi2246g00011 476 Pfam Uracil phosphoribosyltransferase 263 464 - -
Gabi2246g00011 476 FunFam Uridine kinase 44 248 - -
Gabi2246g00011 476 CDD UMPK 49 245 IPR000764 -
Gabi2246g00011 476 SUPERFAMILY PRTase-like 248 465 IPR029057 -
Gabi2246g00011 476 CDD PRTases_typeI 322 437 IPR000836 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2246g00011 Gabi-Chr2246 242050 249364 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2246g00011 1 467 PRT Gene Family AT4G26510 83.582 0.0 815
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2246g00011 K00876 - gmx:100792258 899.042