LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi2246g00010	ATGGATGCTAAATCTGCTGTAGATCTAATGGAGTCTTCCTCTGAGGTTCATTTTTCTGGATTTCACATGGATGGTTTTGAGCAAAGAAAGGCTAGCACAGAACAACCGACAACATCAGATACTGAAATGTATAAACAACCTTTTGTCATAGGTGTTGCTGGGGGTGCAGCATCTGGAAAGACAACAGTTTGTGATAAGATTATTCAGCAGCTTCATGATCAACGGGTTGTACTTGTTAATCAGGATTCTTTTTATAATAACTTGACTGAGGAGGAACTTAAAAGAGTACAGGATTACAACTTTGACCATCCTGATGCTTTTGATACTGAGCAATTGCTCGATGTTATGGACAAGTTGAAGTGTGGCGAATCAGTAGATATTCCGAAGTATGATTTTAAGAGTTACAAGAGTCATGTGTTAAGAAGGGTAAACCCTTCAGATGTTATAATTTTGGAAGGCATCCTCGTTTTCCATGATCCACGTGTTCGGGGGTTGATGAATATGAAGATATTTGTTGACACAGATGCTGATGTTCGTTTGGCAAGAAGGATTAGGCGTGATACTGCTGAGAAGGGTCGGGACATTGCAGCAGTTCTTGATCAGTATTCAAAATTTGTGAAGCCAGCTTTTGATGACTTTATTCTTCCAACAAAGAAGTATGCTGATATAATTATACCCCGTGGAGGAGATAATCATGTGGCCATTGATTTGATTGTTCAGCATATCCGCACTAAGCTTGGTCAGCATGACCTGTGTAAAATATATCCAAATTTATACGTCATTCATTCAACTTTTCAGATACGGGGTATGCATACCCTGATACGTGATGCACAGACAACAAAGCATGATTTTGTATTTTATTCTGATCGTTTGATTCGTTTGGTTGTAGAACATGGCTTGGGGCATCTGCCATTTACAGAGAAGCAAGTAGTCACCCCCACTGGTTCTGTATACACCGGTGTGGATTTTTGTAAGAGGTTGTGTGGTGTCTCTGTCATCAGGAGTGGGGAGAGTATGGAGAATGCTTTACGAGCATGCTGTAAAGGTATCAAGATTGGGAAAATTCTAATTCACAGAGAAGGTGACAATGGTCAACAGGTTTGTCCATCCACATGTATGCTTTGGTACATTATGTTTTTCATTTTTTCATCACTGACTTCTTATACTTTGATCAATGAGCAGCTAATATATGAAAAGTTGCCAAATGATATCTCAGATAGGCATGTCTTACTGTTGGACCCTATCCTTGGCACAGGTAATTCGGCTGTTCAAGCAATTTCTTTACTTATAAGAAAGGGTGTACCGGAGTCAAATATCATCTTTCTTAATCTCATATCTGCACCTAAAGGTGTGCATGTGGTCTGCAAATGTTTTCCAAGAATAAAAATAGTGACATCTGAGATTGAGATTGGTTTGAATGAAGATTTCCGTGTCATACCAGGCATGGGAGAGTTTGGAGATAGGTACTTTGGAACAGATGATGATAATGAGCAAGTGGTGGTTCCTTCACAGTAG	1515	0.3954	MDAKSAVDLMESSSEVHFSGFHMDGFEQRKASTEQPTTSDTEMYKQPFVIGVAGGAASGKTTVCDKIIQQLHDQRVVLVNQDSFYNNLTEEELKRVQDYNFDHPDAFDTEQLLDVMDKLKCGESVDIPKYDFKSYKSHVLRRVNPSDVIILEGILVFHDPRVRGLMNMKIFVDTDADVRLARRIRRDTAEKGRDIAAVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNLYVIHSTFQIRGMHTLIRDAQTTKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSVYTGVDFCKRLCGVSVIRSGESMENALRACCKGIKIGKILIHREGDNGQQVCPSTCMLWYIMFFIFSSLTSYTLINEQLIYEKLPNDISDRHVLLLDPILGTGNSAVQAISLLIRKGVPESNIIFLNLISAPKGVHVVCKCFPRIKIVTSEIEIGLNEDFRVIPGMGEFGDRYFGTDDDNEQVVVPSQ	504

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi2246g00010	504	SUPERFAMILY	PRTase-like	248	493	IPR029057	-
	Gabi2246g00010	504	NCBIfam	uridine kinase	45	245	IPR000764	-
	Gabi2246g00010	504	CDD	PRTases_typeI	322	465	IPR000836	-
	Gabi2246g00010	504	FunFam	Uridine kinase	44	248	-	-
	Gabi2246g00010	504	Gene3D	-	43	248	IPR027417	-
	Gabi2246g00010	504	Gene3D	-	249	492	IPR029057	-
	Gabi2246g00010	504	Pfam	Phosphoribulokinase / Uridine kinase family	49	233	IPR006083	GO:0005524\|GO:0016301
	Gabi2246g00010	504	PRINTS	Uridine kinase signature	122	137	-	-
	Gabi2246g00010	504	PRINTS	Uridine kinase signature	177	187	-	-
	Gabi2246g00010	504	PRINTS	Uridine kinase signature	77	88	-	-
	Gabi2246g00010	504	PRINTS	Uridine kinase signature	47	64	-	-
	Gabi2246g00010	504	PRINTS	Uridine kinase signature	191	202	-	-
	Gabi2246g00010	504	PRINTS	Uridine kinase signature	213	226	-	-
	Gabi2246g00010	504	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	43	238	IPR027417	-
	Gabi2246g00010	504	PANTHER	URIDINE KINASE	37	361	-	-
	Gabi2246g00010	504	Pfam	Uracil phosphoribosyltransferase	263	492	-	-
	Gabi2246g00010	504	CDD	UMPK	49	245	IPR000764	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi2246g00010	Gabi-Chr2246	242050	249364	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi2246g00010	1	495	PRT Gene Family	AT4G26510	78.873	0.0	800

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi2246g00010	K00876		-	gmx:100792258	884.019