Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2246g00009 ATGCCTGGAAGCTTAAGGAATCTGTCACTTTCTCCCAAAATCTTCTCCTTCACCTTGCTTCTCTCATTAAACATCCTTCTCTTTCCATGTTGTTACTCCCTTAATGAACAAGGCCAAGCTCTTTTAGCATGGAAAAACAGTTTAAACAGTACTCTAGATGCATTAGAATCATGGAATCCTTCACCTCCAAGCCCATGCAATTGGTTTGGGGTGCACTGCAACTCACAAGGAGATGTGATAGAGATAAACCTGAAATCAGTGAACTTACAAGGCTCATTACCTTCAAATTTTCAACCTCTCATGTCCTTGAAGATTCTTGTCCTCTCATCAACCAACATCACAGGAAGGATTCCAAAAGAGATTGGAGACTATCAAGAGCTCATCTTTGTTGATCTTAGTGGAAATTCTCTTTTGGGTGAAATCCCAGAAGAGATTTGCAGCCTAAGTAAACTTGAGACTTTATCTCTCCATACAAACTTCCTTGAAGGAAATATTCCATCCAACATTGGAAATCTATCAAGTCTTGTGAACTTGACAATCTATGACAATCATCTGAGTGGTGAAATTCCAAAGAGTATTGGCTCATTAAGCAAACTACAAGTATTCAGAGCAGGTGGCAATAAAAACCTCAAGGGTGAGATCCCATGGGACATTGGAAACTGCACCAACTTGGTCATGTTAGGCCTTGCAGAAACCAGCATTTCTGGGTGTCTTCCTTCTTCAATCCAAATGCTGAAAAGAATTAAGACCATAGCCATTTACACCACTCTATTGTCAGGCTCCATTCCAGAAGAGATTGGCAATTGCAGTGAGTTGCAGAACCTGTACTTGTATCAAAACTCTATCTCAGGTTCAATCCCAAGCCAAATTGGAGAGCTCAGCAAGCTAGAGAATCTACTTTTGTGGCAAAACAACATAGTTGGTACAATCCCAGAAGAGCTTGGAGGCTGCACAGAGATCAAAGTCATAGAATTATCAGAAAATCTTCTCACAGGTAGCATACCAAGGAGTTTTGGTCAGCTTTCAAATCTCGAAGAACTTCAACTGAGTGTCAATCAGCTCTCAGGTACAATACCTCCTGAAATTTCAAACTGCACTTCTCTGACTCAACTTGAAGTTGACAACAATGCTCTCTCAGGTCAGATTCCTGATCTTATTGGTAACTTGAGAAGCTTGAATCTGTTCTTTGCATGGCAGAACAAGCTAACAGGAAAAATCCCAAATAGTCTTTCAGAGTGCCAAGACCTTCAGGCACTTGATCTGTCTTACAACAATTTGATTGGTCCAATACCAAAACAACTATTTGGGTTGAGGAATCTCACCAAACTTCTCCTTCTTTCCAATGATTTATCAGGCTTTATACCTCCTGATATAGGTAACTGCACAAGTCTCTACAGGCTGCGTTTGAATCAGAATAGACTTGCAGGTAACATTCCACCTGAGATTGGAAACTTAAGGAGTTTGAATTTTGTGGATATGAGCAGCAATCATCTTGTAGGGGAGATTCCTTCAACACTATCTGGATGCCAAGATCTTGAGTTTCTTGACCTTCATTCAAATAGTCTCACAGGTTCTGTACCAGATTCTTTGCCCAAAAGCCTTCAATTGATTGACTTGTCATACAATAGGCTAACAGGTGCATTGAGTCAAAGCATTGGTTCATTAACTGAGTTAACCAAACTCAACCTGGGAAACAATCAGCTAAGTGGAAGAATCCCATCAGAGATCTTATCTTGCTCTAAGCTACAACTTCTAGACTTGGGAAGCAATAGTTTCACTGGAGAAATACCAAAGGAATTAGGCCTAATTCCTTCACTGGAAATCTCTCTCAATCTTAGCTGTAACCAGTTTTCTGGTGAAATTCCATCACAGTTCTCTAGTCTTAGCAAACTAGGAGTGCTTGATCTCTCACACAACAAGCTCTCAGGGAATTTAGATGCTCTCTCTGACCTTCAGGATCTTGTGTCTTTAAATGTTTCCTTCAATGGCTTCTCCGGTGAATTGCCTGACACCCCATTCTTCCATAAACTCCCTCTCAGTGATCTCACTGAAAATGAAGGTCTCTACATTGCTGGGGGTGTTGTAACTCCTGCTGACAGAATGGAATCCAAAAGCCATGTCAAATCAACTATGAAGTTTGTTATGTCCATTCTATTAAGCACCAGTGCTGTACTAGTGCTCCTCACAATCTATGTCTTGGTTCGTGCTCATATGGCCAACAAGGTGCTCATGGAAAATGATAGTTGGGAGGTGACTCTGTATCAGAAGTTTGACTTCTCCATTGATGACATTGTCTTGAATTTGACATCTTCCAATGTGATTGGCACTGGAAGCTCTGGAGTTGTGTACAAGGTGACAGTTCCAAATGGTGAAACACTAGCAGTTAAAAAGATGTGGTCATCAGAAGAGTATGGAGCATTCAATTCTGAAATTCAAACATTGGGGTCAATTAGACACAAGAATATCATCAGGCTTCTGGGTTGGGGATCCAATAAGAACCTGAAGCTTCTGTTTTATGACTACCTCCCTAATGGAAGCCTGAGTTCATTACTTCATGGTTCAGAGAAGGGAAAAGCAGAATGGGAGACAAGATATGATGTTATATTAGGTGTGGCTCATGCACTTGCATATTTGCACCATGACTGTGTGCCTGCTATAATGCATGGAGATGTCAAAGCCATGAATGTGTTATTAGGTCCTGGCTATCAACCTTACCTTGCTGACTTTGGCCTGGCAAGAATTGTAAGTGAAAATGGTGATAGTACTAATTCCAAGCCAGTTCAAAGACATTACCTTGCTGGTTCATATGGATACATGGCTCCTGAACATGCATCAATGCAACCTATTACTGAGAAAAGTGATGTGTATAGTTTTGGTATGGTTCTAATTGAGGTCTTAACAGGAAGGCACCCATTAGACCCAACTCTACCAGGGGGTGCACACTTGGTTCAGTGGGTTAGGAACCACTTAGCAAGCAAAGGAGACCCATGTGACATTCTTGACACAAAGCTTAGAGGAAGAGCTGACCCTACAATGCATGAAATGCTACAAACTCTAGCAGTGTCATTTCTATGTGTAAGCACTAGAGCTGTTGACCGTCCAACAATGAAGGACATTGTTGCAATGCTCAAGGAAATTAGACCTGTTGAGACCTCAAGGGCAGACTCTGATGCATTGAAAGGAGGTTTAACATCACACAGTTCCCCAACACCTCCTAAGAATGTAGCTTCACATGGGTCTTCTTCATGTTCCTATAATTTCTCTGATGACTCAATCAGTTGA 3282 0.4122 MPGSLRNLSLSPKIFSFTLLLSLNILLFPCCYSLNEQGQALLAWKNSLNSTLDALESWNPSPPSPCNWFGVHCNSQGDVIEINLKSVNLQGSLPSNFQPLMSLKILVLSSTNITGRIPKEIGDYQELIFVDLSGNSLLGEIPEEICSLSKLETLSLHTNFLEGNIPSNIGNLSSLVNLTIYDNHLSGEIPKSIGSLSKLQVFRAGGNKNLKGEIPWDIGNCTNLVMLGLAETSISGCLPSSIQMLKRIKTIAIYTTLLSGSIPEEIGNCSELQNLYLYQNSISGSIPSQIGELSKLENLLLWQNNIVGTIPEELGGCTEIKVIELSENLLTGSIPRSFGQLSNLEELQLSVNQLSGTIPPEISNCTSLTQLEVDNNALSGQIPDLIGNLRSLNLFFAWQNKLTGKIPNSLSECQDLQALDLSYNNLIGPIPKQLFGLRNLTKLLLLSNDLSGFIPPDIGNCTSLYRLRLNQNRLAGNIPPEIGNLRSLNFVDMSSNHLVGEIPSTLSGCQDLEFLDLHSNSLTGSVPDSLPKSLQLIDLSYNRLTGALSQSIGSLTELTKLNLGNNQLSGRIPSEILSCSKLQLLDLGSNSFTGEIPKELGLIPSLEISLNLSCNQFSGEIPSQFSSLSKLGVLDLSHNKLSGNLDALSDLQDLVSLNVSFNGFSGELPDTPFFHKLPLSDLTENEGLYIAGGVVTPADRMESKSHVKSTMKFVMSILLSTSAVLVLLTIYVLVRAHMANKVLMENDSWEVTLYQKFDFSIDDIVLNLTSSNVIGTGSSGVVYKVTVPNGETLAVKKMWSSEEYGAFNSEIQTLGSIRHKNIIRLLGWGSNKNLKLLFYDYLPNGSLSSLLHGSEKGKAEWETRYDVILGVAHALAYLHHDCVPAIMHGDVKAMNVLLGPGYQPYLADFGLARIVSENGDSTNSKPVQRHYLAGSYGYMAPEHASMQPITEKSDVYSFGMVLIEVLTGRHPLDPTLPGGAHLVQWVRNHLASKGDPCDILDTKLRGRADPTMHEMLQTLAVSFLCVSTRAVDRPTMKDIVAMLKEIRPVETSRADSDALKGGLTSHSSPTPPKNVASHGSSSCSYNFSDDSIS 1093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2246g00009 1093 SUPERFAMILY Protein kinase-like (PK-like) 767 1043 IPR011009 -
Gabi2246g00009 1093 SUPERFAMILY L domain-like 32 311 - -
Gabi2246g00009 1093 MobiDBLite consensus disorder prediction 1061 1093 - -
Gabi2246g00009 1093 ProSitePatterns Serine/Threonine protein kinases active-site signature. 886 898 IPR008271 GO:0004672|GO:0006468
Gabi2246g00009 1093 SMART LRR_typ_2 628 651 IPR003591 -
Gabi2246g00009 1093 SMART LRR_typ_2 437 461 IPR003591 -
Gabi2246g00009 1093 SMART LRR_typ_2 148 172 IPR003591 -
Gabi2246g00009 1093 SMART LRR_typ_2 485 509 IPR003591 -
Gabi2246g00009 1093 SMART LRR_typ_2 293 317 IPR003591 -
Gabi2246g00009 1093 SMART LRR_typ_2 555 579 IPR003591 -
Gabi2246g00009 1093 SMART LRR_typ_2 341 365 IPR003591 -
Gabi2246g00009 1093 FunFam Leucine-rich receptor-like protein kinase family protein 336 608 - -
Gabi2246g00009 1093 Gene3D Transferase(Phosphotransferase) domain 1 842 1061 - -
Gabi2246g00009 1093 PRINTS Leucine-rich repeat signature 534 547 - -
Gabi2246g00009 1093 PRINTS Leucine-rich repeat signature 628 641 - -
Gabi2246g00009 1093 MobiDBLite consensus disorder prediction 1051 1093 - -
Gabi2246g00009 1093 FunFam Predicted protein 192 288 - -
Gabi2246g00009 1093 Pfam Leucine rich repeat N-terminal domain 35 74 IPR013210 -
Gabi2246g00009 1093 Gene3D Phosphorylase Kinase; domain 1 741 841 - -
Gabi2246g00009 1093 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 842 1060 - -
Gabi2246g00009 1093 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 358 1038 - -
Gabi2246g00009 1093 SMART serkin_6 768 1024 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2246g00009 1093 Pfam Leucine rich repeat 295 354 IPR001611 GO:0005515
Gabi2246g00009 1093 Pfam Leucine rich repeat 609 663 IPR001611 GO:0005515
Gabi2246g00009 1093 ProSiteProfiles Leucine-rich repeat profile. 630 652 IPR001611 GO:0005515
Gabi2246g00009 1093 FunFam Leucine-rich receptor-like protein kinase family protein 34 191 - -
Gabi2246g00009 1093 Pfam Protein kinase domain 771 1039 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2246g00009 1093 Gene3D Ribonuclease Inhibitor 432 530 IPR032675 -
Gabi2246g00009 1093 Gene3D Ribonuclease Inhibitor 609 692 IPR032675 -
Gabi2246g00009 1093 Gene3D Ribonuclease Inhibitor 335 431 IPR032675 -
Gabi2246g00009 1093 Gene3D Ribonuclease Inhibitor 31 92 IPR032675 -
Gabi2246g00009 1093 Gene3D Ribonuclease Inhibitor 93 334 IPR032675 -
Gabi2246g00009 1093 Gene3D Ribonuclease Inhibitor 531 608 IPR032675 -
Gabi2246g00009 1093 SUPERFAMILY L domain-like 609 685 - -
Gabi2246g00009 1093 ProSitePatterns Protein kinases ATP-binding region signature. 774 797 IPR017441 GO:0005524
Gabi2246g00009 1093 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 737 841 - -
Gabi2246g00009 1093 SUPERFAMILY RNI-like 286 607 - -
Gabi2246g00009 1093 ProSiteProfiles Protein kinase domain profile. 768 1046 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2246g00009 1093 SMART LRR_sd22_2 148 174 - -
Gabi2246g00009 1093 SMART LRR_sd22_2 531 557 - -
Gabi2246g00009 1093 SMART LRR_sd22_2 628 647 - -
Gabi2246g00009 1093 SMART LRR_sd22_2 269 295 - -
Gabi2246g00009 1093 SMART LRR_sd22_2 341 364 - -
Gabi2246g00009 1093 FunFam Putative LRR receptor-like serine/threonine-protein kinase 609 694 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2246g00009 Gabi-Chr2246 183154 186761 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2246g00009 31 1092 Receptor kinase-like Gene Family AT5G56040 67.787 0.0 1438
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gabi2246g00009 Pkinase 1.2e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2246g00009 - - gmx:100802880 1862.04