Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2239g00020 ATGGGAAAGAAAAACAAAATGAGGGAAGATGGTGGCAAAGAACACTGTCCTTCAACTCTCTTTGTTTCCAATTTGCCCTATTCGTTTTCCAACTCTCAGCTCGAGGAAACGTTCAGCGAGGTTGGACCTGTCAGGCGTTGCTTCATGGTCGCACAGAAGGGGTCAGCCCAGCATCGTGGTTTCGGTTATGTTCATTTTGCTGTTGAGGAAGATGCTAACCGAGCTATTGAGCTGAAGAATGGTTCATCTGTTGGAGGCCGGAAAATTTCAGTGAAGCATGCAATGCCTCGTCCTACCCGTGAAGAAAGACAATCAAAACCAAATCAAGCGGGCAAGACAGATGATCTCACAGAGTCAAAAAATAATGATAAAGACAGCAGATTATCTGAAGAAGAGAAGCCAGTTTCAGTTTTGAAGGAAGAAGAAGTACAAGTATCAAATAAACAAAAAAACTCAAGGAAGCCCTTGGAAATGAGAAAAGCAGCTCTTTGTAATGATGTAGCAGATGAGGGGGGTTGCTCAGAAAAGCAGAGGGTTGCAAGAACTGTTATATTTGGTGGTCTTATGAATTCTGATATGGCTGAAGATGTTCACCACAAAGCCAGAGAGATTGGCACTGTGTGTTCCATTAAGTACCCCCTTTCAAGGAAAGATCTTGAGCAACATGGTCTCCTGCAAGATGGCTGTACTTTGGATGCTTCAGCTGTACTTTACACAAGTGTAAAATCAGCTCGAGCTTCTGTTGCAACATTACATAAAAAAGAGATAGGAGGGGGAACTGTTTGGGCCCGCCAACTGGGTGGAGAGGGATCCAAGACTCAGAAATGGAAGCTTATTGTCAGAAATCTTCCTTTCAAGGCCAGAGAAAATGAAATAAGAGATATGTTTTCATCTGCAGGGTATGTGTGGGATGTATTTATTCCACACAAGTCAGACACAGGATTGTCTAAGGGTTTTGCATTTGTAAAATTCACCTGCAAGCTTGATGCGGAAAATGCCATTCAAAGGCTCAATGGATCAAAGTTTGGGAAACGGCTCATTGCTGTTGACTGGGCTGTTCCAAAAAAGATATTTAGTAGTGATACAAATGATGCTCTTGCTTCAGAGAAAGGACAAGAAAAGTTGGGAGATGAAGATTGTAATACTACTGAGGACGATGTTGAGCATATTGTCAAACAATCTTGTCAAGGAGATGATAGTGACATAGATAATTCTAGTGCCATGGAGGAAGGCGGTGTTCCTTCTGAAGTTAATTTTGATAAGGAAGCAGACATTGCAAGAAAAGTTCTTAAAAGCTTGATTACATCCTCTACCAAAGGAACATCTGTAATTAATAATTCTATGTTGTCCAAAGAAAACAAGGAGCCAAAATCCAATGCAATTGTTAAGGATGCAGATAGTAAAGCATCTTATGAGTCTGAAAAGGTGTCAGGTGTAGAGCGTGAAATTCCCGGCGGAAACAAGTTATCAAATCCTAAGCAAGCAGAAGAAGCTGATTTGCAGAGAACAGTTTTTATAAGTAATCTTCCCTTTGAATGCGATAATGAAGAAGTGAAGCAACGATTTTCTGGATTTGGGGAAGTAGAATACTTTGTTCCTGTTCTCCACCAAGTAACCAAGCGACCAAGAGGAACTGGGTTTCTCAAGTTTAAAACCGTAGAAGCAGCTGATGCTGCAATTTCAACTGCCAGTGCTTCTTCTGGGTTGGGTATTTTACTGAAAGGTAGACCATTAAAAGCTTTAAAGGCGTTGGATAAGAAATCAGCTCATGACAAGGAACTGGAGAAAGCAAAAAATGAGGTTCATGACCACCGCAATCTTTACTTGGCAAAGGAGGGACTCATTCTTGAGGGAACTCCAGCTGCTGAAGGGGTTTCAGCAAGCGATATGTTAAAACGGCAAGAGTTAGAAAGAAAAAAGAAGACAAAGCTGCAATCTCCAAATTTTCATATTTCAAGAACTAGACTTGTTATCTACAACTTACCAAAGTCAATGACTGAAAAAGAACTCAAGAAGCTTTGCATTGATGCAGTCATCTCTAGAGCTACCAAGCAAAACCCTGTAATTCGGCAGATAAAGTTTTTGAAAGATGGAAAGAATGGAAAGGTTGTTCAAAAACATTATTCACGTGGAGTTGCCTTTCTTGAATTTTCTGAGCATCAGCATGCCCTTGTGGCTCTGAGAGTTCTTAACAATAATCCTGAAACTTTTGGTCCTGAACAACGGCCAATCGTGGAGTTTGCTCTTGATAATGTTCAAACCCTGAAACTTAGGAAGGCAAAGCTACATTCTCAGCAGCGGGTTCCTTATGATGACAACGATGCCAAGGAAAATAACAAACCCGGCTTAGTAGAAGTTCATGTAAAGGACAGAAAAAGAAAATACCAAGATCATGACAAACCAACAAAGGACCAAGTACTGAATTCAAATGGTGAATTTGGTGCTACAATGGCAAAGGGAAAATCCCCTCAAGGATCCAAAAGACAAAAAGGCAACCATAAGAGAACAAGCTCTGAAGTGCCATCACTGAAAGAAAATCCAGAAGCTTTGTCCATGAAGTCAAAGAATAACCATGATGGCAAGAATCATGGCAGGACATCACTTGAAGGTCAAAGCACTTCCATTGACACTAATAAAAGAAAATCAGGAAACAAAGATCATGTTGGATTTAGAAAAAGGAAGATGCAAAACCAAGAAGAACAAGCAGGTCAAAAGGTTTCTCAGAAACGGCCTAAGAAGAATAAAGATTCAATAGGGAAAGACGTAGTAGATAAGCTTGACATGCTTATAGAACAATATAGATCCAAGTTCTCACAGAAGGGTTCCCAAGGGAATGATGGAGAGAAGAAACCTTCTAAACAGCTTAGAAAATGGTTCCAATCATAG 2886 0.4047 MGKKNKMREDGGKEHCPSTLFVSNLPYSFSNSQLEETFSEVGPVRRCFMVAQKGSAQHRGFGYVHFAVEEDANRAIELKNGSSVGGRKISVKHAMPRPTREERQSKPNQAGKTDDLTESKNNDKDSRLSEEEKPVSVLKEEEVQVSNKQKNSRKPLEMRKAALCNDVADEGGCSEKQRVARTVIFGGLMNSDMAEDVHHKAREIGTVCSIKYPLSRKDLEQHGLLQDGCTLDASAVLYTSVKSARASVATLHKKEIGGGTVWARQLGGEGSKTQKWKLIVRNLPFKARENEIRDMFSSAGYVWDVFIPHKSDTGLSKGFAFVKFTCKLDAENAIQRLNGSKFGKRLIAVDWAVPKKIFSSDTNDALASEKGQEKLGDEDCNTTEDDVEHIVKQSCQGDDSDIDNSSAMEEGGVPSEVNFDKEADIARKVLKSLITSSTKGTSVINNSMLSKENKEPKSNAIVKDADSKASYESEKVSGVEREIPGGNKLSNPKQAEEADLQRTVFISNLPFECDNEEVKQRFSGFGEVEYFVPVLHQVTKRPRGTGFLKFKTVEAADAAISTASASSGLGILLKGRPLKALKALDKKSAHDKELEKAKNEVHDHRNLYLAKEGLILEGTPAAEGVSASDMLKRQELERKKKTKLQSPNFHISRTRLVIYNLPKSMTEKELKKLCIDAVISRATKQNPVIRQIKFLKDGKNGKVVQKHYSRGVAFLEFSEHQHALVALRVLNNNPETFGPEQRPIVEFALDNVQTLKLRKAKLHSQQRVPYDDNDAKENNKPGLVEVHVKDRKRKYQDHDKPTKDQVLNSNGEFGATMAKGKSPQGSKRQKGNHKRTSSEVPSLKENPEALSMKSKNNHDGKNHGRTSLEGQSTSIDTNKRKSGNKDHVGFRKRKMQNQEEQAGQKVSQKRPKKNKDSIGKDVVDKLDMLIEQYRSKFSQKGSQGNDGEKKPSKQLRKWFQS 961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2239g00020 961 SUPERFAMILY RNA-binding domain, RBD 272 356 IPR035979 GO:0003676
Gabi2239g00020 961 MobiDBLite consensus disorder prediction 84 156 - -
Gabi2239g00020 961 MobiDBLite consensus disorder prediction 395 414 - -
Gabi2239g00020 961 CDD RRM4_RBM28_like 654 751 - -
Gabi2239g00020 961 SMART rrm1_1 277 350 IPR000504 GO:0003723
Gabi2239g00020 961 SMART rrm1_1 503 581 IPR000504 GO:0003723
Gabi2239g00020 961 SMART rrm1_1 655 746 IPR000504 GO:0003723
Gabi2239g00020 961 SMART rrm1_1 19 92 IPR000504 GO:0003723
Gabi2239g00020 961 SMART rrm2_1 19 92 IPR003954 GO:0003676
Gabi2239g00020 961 SMART rrm2_1 503 581 IPR003954 GO:0003676
Gabi2239g00020 961 SMART rrm2_1 277 350 IPR003954 GO:0003676
Gabi2239g00020 961 CDD RRM1_RBM28_like 19 97 - -
Gabi2239g00020 961 FunFam RNA-binding motif protein 28 653 748 - -
Gabi2239g00020 961 Gene3D - 653 748 IPR012677 -
Gabi2239g00020 961 Gene3D - 265 384 IPR012677 -
Gabi2239g00020 961 MobiDBLite consensus disorder prediction 762 961 - -
Gabi2239g00020 961 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 96 IPR000504 GO:0003723
Gabi2239g00020 961 MobiDBLite consensus disorder prediction 472 494 - -
Gabi2239g00020 961 MobiDBLite consensus disorder prediction 879 931 - -
Gabi2239g00020 961 Coils Coil 580 607 - -
Gabi2239g00020 961 SUPERFAMILY RNA-binding domain, RBD 502 732 IPR035979 GO:0003676
Gabi2239g00020 961 Gene3D - 2 110 IPR012677 -
Gabi2239g00020 961 MobiDBLite consensus disorder prediction 116 156 - -
Gabi2239g00020 961 Gene3D - 489 593 IPR012677 -
Gabi2239g00020 961 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 654 762 IPR000504 GO:0003723
Gabi2239g00020 961 SUPERFAMILY RNA-binding domain, RBD 18 262 IPR035979 GO:0003676
Gabi2239g00020 961 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 278 347 IPR000504 GO:0003723
Gabi2239g00020 961 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 89 IPR000504 GO:0003723
Gabi2239g00020 961 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 504 562 IPR000504 GO:0003723
Gabi2239g00020 961 CDD RRM2_RBM28_like 277 353 - -
Gabi2239g00020 961 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 276 354 IPR000504 GO:0003723
Gabi2239g00020 961 MobiDBLite consensus disorder prediction 851 865 - -
Gabi2239g00020 961 PANTHER RNA-BINDING MOTIF PROTEIN 14B 15 961 - -
Gabi2239g00020 961 MobiDBLite consensus disorder prediction 94 109 - -
Gabi2239g00020 961 FunFam - 2 128 - -
Gabi2239g00020 961 MobiDBLite consensus disorder prediction 764 805 - -
Gabi2239g00020 961 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 502 585 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2239g00020 Gabi-Chr2239 252874 263023 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2239g00020 22 99 Eukaryotic Initiation Factors Gene Family AT3G11400 37.179 2.97e-08 54.7