Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2239g00016 ATGGGGTCAGTGCCAGCTAAACGCCCCCCTCCAAACGGATTTTCTCCTGAGGATCTCAAGAGACAGAAATTATCAAGTGATAGCCTGCCATTTTCAGCACATGATAAAATTGAACCAAATACACCGAAGAATTACTCAAACGTGGTAAAATACAGCAATCCATTTGCAATTTCTGACGTTCTTAATCGTTTAGACAGTGGAAAATTTGGAAGTGTCACAAAGGACATAGAGGCCCTAGTGGAGCGCAAAATGCAAATACTGGGCCCTTACATTGCAAAATATCCCACGCTTGTTAATCAATGGAAAGCAGTATTGAATCATGATGAAGAAGCTCATAAGTTGGAAAACGAACAAGTTACTGGTTTGGCACATCAAAATGTCATAGATTTGGTGGGGGAGCACTTTGGAAAGGATGCTCCTGCAGCAACATTTCCTGTTGTAATTATTGATTCAGATGAGGAAGATGATAGAGATCAAAAATATTTTCTTCCATTTCATGAAGTTGTGTTACCGAAACGAGTTGGACAGTCTCCTCCAGTGAAGATGATTGGTTATCGTGCTCCCACTGCTTACAATGGAGGAAGTAAAGATCTAAAAACAAGTCTGGCTGGTGAAGGTAACCCAAGGAGAGATAATGGAGTTTATGTTGGTGTACAGGAGGAAGAAGATCATCAGGATGTTTCTGAGAATCCTCTGCCCGATGAAGAATCAGAAAAAGATGAGGACTGTGATCATTCTTTTGTTTTAAAAGATGATCTTGGTTATGTTTGTCGCGTTTGTGGGATTATCGACAGAGGAATTGAAACCATATTCGAGTTCCAGTACAAGGTTAAAAGGAGCACAAGAACTTATTTGCGCGATTCATGGAATGCCAAAGAAAAGACAGATGTATTTGGAATTAAGATTGGTGAAGATGATCTCATGGTAACTGAAGTCTCAGCACATCCTAGGCATATGAAGCAAATGAAACCTCATCAAGTTGAAGGATTCAATTTTCTTGTTAGAAACCTTGTGGGTGATCATCCTGGGGGCTGCATCTTGGCCCATGCTCCAGGATCTGGGAAGACATTCATGATAATCAGTTTTGTGCAAAGTTTTTTAGGCAAGTATCCTAATGCTAGACCTCTAGTGGTGCTTCCTAAGGGAATACTATCGACTTGGAAAAGGGAGTTCCAAATATGGCAAGTGGAGGACATACCACTCTATGATTTTTACACTGTGAAGGCAGATAGTAGATATCAACAACTGGAAGTGTTGAAGCAGTGGGTGGAGCATAAGAGTATCCTTTTCTTAGGATACAAACAGTTCTCTTCAATTGTATGTGATAATGGAAATGACAGCATATCAATATCTTGCCAAGAAATTTTGCTCAAGAAACCCTCAATTCTGATTTTAGATGAGGGACATACTCCAAGGAATGAAAATACTGATATGGTACAGTCCCTTGCGAAAGTACAAACGCCTAGAAAAGTTGTACTATCAGGTACCCTATATCAAAATCATGTCAAGGAGGTGTTTAGCATCTTAAATCTAGTGCGGCCAAGGTTTGAAAAGATGGAAACATCTAGGCCTATTGTGAAGCGCATTCAGAGTAGAGTACATATACCTGCCGTGAAAAGCTTCTATGATTTAGTTGAAAACACTTTGCAGAAGGACACAGATTTTAGAAGGAAAGTGGCTGTCATACAAGATTTGCGTGAGATGACAAGCCAGGTACTTCACTATTATAAAGGAGATTTTCTTGATGAGCTTCCTGGTCTCGTAGATTTTACTGTTATACTCAAACTTACCCCTCGACAGAAGCATGAAACAAAGGAATTAAAGAGTTTATCTAGAAAGTTCAAGATATGTTCTGTAGGCAGTGCTGTCTATCTCCATCCTAAATTGAAATCTGAAGCAGAAAAGTGTGGTGAGAAAATTTGTATATCTGATAGTAAAATGGATGATCTGATAGAGAAACTAAATGTGAAAGATGGAGTTAAGTCAAAATTCTTTTGCAACATGCTAAACCTATGTGAATCAGCCGTGGAGAAGCTTCTGGTATTTAGCCAATATCTCTTGCCTTTAAAATATTTAGAAAGATTAACTGTGAAATTGAAGGGCTGGAGTCATGGAAGAGAAATCTTTGTAATCTCAGGAGAATCAAGCCCTGAACAAAGGGAGTGCTCCATGGAAAAGTTTAACAATTCACCAGATGCCAAAGTCTTCTTTGGCTCAATCAAGGCATGTGGAGAGGGCATATCATTGGTCGGGGCATCCCGCATAATTATTTTGGATGTTCATCTCAATCCATCAGTTACTCGCCAAGCTATTGGCCGTGCATTCCGACCGGGCCAGAAAAAGAAAGTGTTTGTGTATCGATTGATAGCGGCTGATTCTCCAGAAGAGGAGGATCACACTACATGTTTCAAGAAGGAATTGATTGCAAAGATGTGGTTCGAATGGAATGAGTATTGTGGTGATCGAGCTTTTGAAGTTGAGTCAGTTGAAGTGAAAGATTGTGGTGATCTGTTTCTTGAAAGTCCATTGTTAGGGGAAGATGTAAAAGCTCTGTATAGAAGGTAG 2565 0.3977 MGSVPAKRPPPNGFSPEDLKRQKLSSDSLPFSAHDKIEPNTPKNYSNVVKYSNPFAISDVLNRLDSGKFGSVTKDIEALVERKMQILGPYIAKYPTLVNQWKAVLNHDEEAHKLENEQVTGLAHQNVIDLVGEHFGKDAPAATFPVVIIDSDEEDDRDQKYFLPFHEVVLPKRVGQSPPVKMIGYRAPTAYNGGSKDLKTSLAGEGNPRRDNGVYVGVQEEEDHQDVSENPLPDEESEKDEDCDHSFVLKDDLGYVCRVCGIIDRGIETIFEFQYKVKRSTRTYLRDSWNAKEKTDVFGIKIGEDDLMVTEVSAHPRHMKQMKPHQVEGFNFLVRNLVGDHPGGCILAHAPGSGKTFMIISFVQSFLGKYPNARPLVVLPKGILSTWKREFQIWQVEDIPLYDFYTVKADSRYQQLEVLKQWVEHKSILFLGYKQFSSIVCDNGNDSISISCQEILLKKPSILILDEGHTPRNENTDMVQSLAKVQTPRKVVLSGTLYQNHVKEVFSILNLVRPRFEKMETSRPIVKRIQSRVHIPAVKSFYDLVENTLQKDTDFRRKVAVIQDLREMTSQVLHYYKGDFLDELPGLVDFTVILKLTPRQKHETKELKSLSRKFKICSVGSAVYLHPKLKSEAEKCGEKICISDSKMDDLIEKLNVKDGVKSKFFCNMLNLCESAVEKLLVFSQYLLPLKYLERLTVKLKGWSHGREIFVISGESSPEQRECSMEKFNNSPDAKVFFGSIKACGEGISLVGASRIIILDVHLNPSVTRQAIGRAFRPGQKKKVFVYRLIAADSPEEEDHTTCFKKELIAKMWFEWNEYCGDRAFEVESVEVKDCGDLFLESPLLGEDVKALYRR 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2239g00016 854 MobiDBLite consensus disorder prediction 194 213 - -
Gabi2239g00016 854 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 458 816 IPR027417 -
Gabi2239g00016 854 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 222 853 IPR044567 GO:0080188
Gabi2239g00016 854 MobiDBLite consensus disorder prediction 220 243 - -
Gabi2239g00016 854 SMART ultradead3 318 532 IPR014001 -
Gabi2239g00016 854 MobiDBLite consensus disorder prediction 1 44 - -
Gabi2239g00016 854 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 336 515 IPR014001 -
Gabi2239g00016 854 CDD SF2_C_SNF 640 789 - -
Gabi2239g00016 854 Gene3D - 290 547 IPR038718 -
Gabi2239g00016 854 Pfam Helicase conserved C-terminal domain 665 777 IPR001650 -
Gabi2239g00016 854 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 310 520 IPR027417 -
Gabi2239g00016 854 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 646 830 IPR001650 -
Gabi2239g00016 854 SMART helicmild6 693 778 IPR001650 -
Gabi2239g00016 854 Pfam SNF2-related domain 342 568 IPR000330 GO:0005524|GO:0140658
Gabi2239g00016 854 Gene3D - 585 841 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2239g00016 Gabi-Chr2239 200405 207537 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2239g00016 677 796 RAD5 or RAD16-like Gene Family AT5G43530 36.667 3.47e-14 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gabi2239g00016 SNF2_N 2.5e-20 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2239g00016 K10875 - gmx:100780454 1342.41