Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2239g00015 ATGGGGTCAGTGCCAGCTAAACGCCCCCCTCCAAACGGATTTTCTCCTGAGGATCTCAAGAGACAGAAATTATCAAGTGATAGCCTGCCATTTTCAGCACATGATAAAATTGAACCAAATACACCGAAGAATTACTCAAACGTGGTAAAATACAGCAATCCATTTGCAATTTCTGACGTTCTTAATCGTTTAGACAGTGGAAAATTTGGAAGTGTCACAAAGGACATAGAGGCCCTAGTGGAGCGCAAAATGCAAATACTGGGCCCTTACATTGCAAAATATCCCACGCTTGTTAATCAATGGAAAGCAGTATTGAATCATGATGAAGAAGCTCATAAGTTGGAAAACGAACAAGTTACTGGTTTGGCACATCAAAATGTCATAGATTTGGTGGGGGAGCACTTTGGAAAGGATGCTCCTGCAGCAACATTTCCTGTTGTAATTATTGATTCAGATGAGGAAGATGATAGAGATCAAAAATATTTTCTTCCATTTCATGAAGTTGTGTTACCGAAACGAGTTGGACAGTCTCCTCCAGTGAAGATGATTGGTTATCGTGCTCCCACTGCTTACAATGGAGGAAGTAAAGATCTAAAAACAAGTCTGGCTGGTGAAGGTAACCCAAGGAGAGATAATGGAGTTTATGTTGGTGTACAGGAGGAAGAAGATCATCAGGTAGATGATGGCCTAGAAGATATTTGGAGAGAGATGTCAATGGCAATAGAATGTTCCAAAGATGTTTCTGAGAATCCTCTGCCCGATGAAGAATCAGAAAAAGATGAGGACTGTGATCATTCTTTTGTTTTAAAAGATGATCTTGGTTATGTTTGTCGCGTTTGTGGGATTATCGACAGAGGAATTGAAACCATATTCGAGTTCCAGTACAAGGTTAAAAGGAGCACAAGAACTTATTTGCGCGATTCATGGAATGCCAAAGAAAAGACAGATGTATTTGGAATTAAGATTGGTGAAGATGATCTCATGGTAACTGAAGTCTCAGCACATCCTAGGCATATGAAGCAAATGAAACCTCATCAAGTTGAAGGATTCAATTTTCTTGTTAGAAACCTTGTGGGTGATCATCCTGGGGGCTGCATCTTGGCCCATGCTCCAGGATCTGGGAAGACATTCATGATAATCAGTTTTGTGCAAAGTTTTTTAGGCAAGTATCCTAATGCTAGACCTCTAGTGGTGCTTCCTAAGGGAATACTATCGACTTGGAAAAGGGAGTTCCAAATATGGCAAGTGGAGGACATACCACTCTATGATTTTTACACTGTGAAGGCAGATAGTAGATATCAACAACTGGAAGTGTTGAAGCAGTGGGTGGAGCATAAGAGTATCCTTTTCTTAGGATACAAACAGTTCTCTTCAATTGTATGTGATAATGGAAATGACAGCATATCAATATCTTGCCAAGAAATTTTGCTCAAGAAACCCTCAATTCTGATTTTAGATGAGGGACATACTCCAAGGAATGAAAATACTGATATGGTACAGTCCCTTGCGAAAGTACAAACGCCTAGAAAAGTTGTACTATCAGGTACCCTATATCAAAATCATGTCAAGGAGGTGTTTAGCATCTTAAATCTAGTGCGGCCAAGGTTTGAAAAGATGGAAACATCTAGGCCTATTGTGAAGCGCATTCAGAGTAGAGTACATATACCTGCCGTGAAAAGCTTCTATGATTTAGTTGAAAACACTTTGCAGAAGGACACAGATTTTAGAAGGAAAGTGGCTGTCATACAAGATTTGCGTGAGATGACAAGCCAGGTACTTCACTATTATAAAGGAGATTTTCTTGATGAGCTTCCTGGTCTCGTAGATTTTACTGTTATACTCAAACTTACCCCTCGACAGAAGCATGAAACAAAGGAATTAAAGAGTTTATCTAGAAAGTTCAAGATATGTTCTGTAGGCAGTGCTGTCTATCTCCATCCTAAATTGAAATCTGAAGCAGAAAAGTGTGGTGAGAAAATTTGTATATCTGATAGTAAAATGGATGATCTGATAGAGAAACTAAATGTGAAAGATGGAGTTAAGTCAAAATTCTTTTGCAACATGCTAAACCTATGTGAATCAGCCGTGGAGAAGCTTCTGGTATTTAGCCAATATCTCTTGCCTTTAAAATATTTAGAAAGATTAACTGTGAAATTGAAGGGCTGGAGTCATGGAAGAGAAATCTTTGTAATCTCAGGAGAATCAAGCCCTGAACAAAGGGAGTGCTCCATGGAAAAGTTTAACAATTCACCAGATGCCAAAGTCTTCTTTGGCTCAATCAAGGCATGTGGAGAGGGCATATCATTGGTCGGGGCATCCCGCATAATTATTTTGGATGTTCATCTCAATCCATCAGTTACTCGCCAAGCTATTGGCCGTGCATTCCGACCGGGCCAGAAAAAGAAAGTGTTTGTGTATCGATTGATAGCGGCTGATTCTCCAGAAGAGGAGGATCACACTACATGTTTCAAGAAGGAATTGATTGCAAAGATGTGGTTCGAATGGAATGAGTATTGTGGTGATCGAGCTTTTGAAGTTGAGTCAGTTGAAGTGAAAGATTGTGGTGATCTGTTTCTTGAAAGTCCATTGTTAGGGGAAGATGTAAAAGCTCTGTATAGAAGGTAG 2625 0.3973 MGSVPAKRPPPNGFSPEDLKRQKLSSDSLPFSAHDKIEPNTPKNYSNVVKYSNPFAISDVLNRLDSGKFGSVTKDIEALVERKMQILGPYIAKYPTLVNQWKAVLNHDEEAHKLENEQVTGLAHQNVIDLVGEHFGKDAPAATFPVVIIDSDEEDDRDQKYFLPFHEVVLPKRVGQSPPVKMIGYRAPTAYNGGSKDLKTSLAGEGNPRRDNGVYVGVQEEEDHQVDDGLEDIWREMSMAIECSKDVSENPLPDEESEKDEDCDHSFVLKDDLGYVCRVCGIIDRGIETIFEFQYKVKRSTRTYLRDSWNAKEKTDVFGIKIGEDDLMVTEVSAHPRHMKQMKPHQVEGFNFLVRNLVGDHPGGCILAHAPGSGKTFMIISFVQSFLGKYPNARPLVVLPKGILSTWKREFQIWQVEDIPLYDFYTVKADSRYQQLEVLKQWVEHKSILFLGYKQFSSIVCDNGNDSISISCQEILLKKPSILILDEGHTPRNENTDMVQSLAKVQTPRKVVLSGTLYQNHVKEVFSILNLVRPRFEKMETSRPIVKRIQSRVHIPAVKSFYDLVENTLQKDTDFRRKVAVIQDLREMTSQVLHYYKGDFLDELPGLVDFTVILKLTPRQKHETKELKSLSRKFKICSVGSAVYLHPKLKSEAEKCGEKICISDSKMDDLIEKLNVKDGVKSKFFCNMLNLCESAVEKLLVFSQYLLPLKYLERLTVKLKGWSHGREIFVISGESSPEQRECSMEKFNNSPDAKVFFGSIKACGEGISLVGASRIIILDVHLNPSVTRQAIGRAFRPGQKKKVFVYRLIAADSPEEEDHTTCFKKELIAKMWFEWNEYCGDRAFEVESVEVKDCGDLFLESPLLGEDVKALYRR 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2239g00015 874 SMART helicmild6 713 798 IPR001650 -
Gabi2239g00015 874 SMART ultradead3 338 552 IPR014001 -
Gabi2239g00015 874 Gene3D - 605 861 IPR027417 -
Gabi2239g00015 874 Pfam SNF2-related domain 362 588 IPR000330 GO:0005524|GO:0140658
Gabi2239g00015 874 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 478 836 IPR027417 -
Gabi2239g00015 874 Gene3D - 310 567 IPR038718 -
Gabi2239g00015 874 MobiDBLite consensus disorder prediction 1 44 - -
Gabi2239g00015 874 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 220 873 IPR044567 GO:0080188
Gabi2239g00015 874 CDD SF2_C_SNF 660 809 - -
Gabi2239g00015 874 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 356 535 IPR014001 -
Gabi2239g00015 874 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 666 850 IPR001650 -
Gabi2239g00015 874 Pfam Helicase conserved C-terminal domain 685 797 IPR001650 -
Gabi2239g00015 874 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 330 540 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2239g00015 Gabi-Chr2239 200405 207537 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2239g00015 697 816 RAD5 or RAD16-like Gene Family AT5G43530 36.667 3.39e-14 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gabi2239g00015 SNF2_N 2.6e-20 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2239g00015 K10875 - gmx:100780454 1387.47