LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi2239g00013	ATGGCTATCCTCCTGGTCATTCTCTTGGCCTTTTCTTCTCCTATATTTTCAGCAGGCCTACCTTCTTCTTCCTTCATTCCTAAAGATAACTTCCTCATTGATTGTGGTGCTGAGAATGTAGCCACCCTCCCTGATGGAAGACAATTCAAATCAGACCCACAAGCCAAATCTTTCTTGCAAGCCAATGATGAATATAAAGTCTCAGCAGATGGTGTGAATGTTCCTTCCCCCATATACTCAAATGCAAGGATTTTCATTCAGGAAGCTAAGTACTCCTTCCATTTGGTTCAACCTGGCTTTCATTGGGTTAGACTTCATTTCTACCCCATTAAAAACAATGTCTTTGATCTTCAGAAGGCTACTTTCTCTGTCAATACAGATACCTATGTTCTTCTCCATAGCTTCAATGTTAACAATAATGAGAAGCCAATCCTCAAGGAGTACCTCATCAATGTAACTCAACCCCAATTCACCATATCCTTCATTCCCTTGAAGAACTCGGCTGCATTCATCAATGCCATTGAAGTTGTTTCAGCTCCTGATAACCTGATCTTTGACAACGGCGCCGGCCTTTTCCCGGTCGCGGAATTTACCGGCCTTACAGCTTATGCTTTCCAACCTGTCTTCAGGCTCAACAATGGAGGATCTTTGATCACCTCATCAAATGACACCCTGGCAAGAACTTGGGAATCTGATGAGCCTTTCCTCACAAACAAGAACTTGGCAAAGAATGTCTCAGTGGCTACCAGTGCCATTAAGTTTCCCAAGGATACACCAACAATTTCTCCTTTGATTGCACCACAAACGGTGTATGCTTCTGCCACTGAAATGGGTGATGCTGGTGTTAACCAGCCAAATTTCAATGTCTCATGGAAATTTGATGTTGACACTTCTTTTAGTTACCTTGTTAGATTGCATTTCTGTGACATTGTAAGCAAAGGGCTTAATGAACTCTACTTTAACGTCTATGTTAATGGGAAAATGGCAATTCCTAACTTGGATTTATCAGCTATTACTGGTGCATTGTCAACCCCATATTACAAAGACATTGTAGTCAATGCAACATTGATGTCTCAAGGACTAACAGTTCAGGTTGGACCAGCAAAATCTGATGGTGGAGATGCCAATGCCATTTTGAATGGTATAGAGGTCTTGAAGATAAGCAATTCTGTGAATAGTTTGGATGGAGAATTTGGGGTTGATGGAAGAAAAGCTAGCGGTTCTAACCGTGGGACAGTTGCAGCAGTTGGATTTGCCATGATGTTTGGAGCATTTGTTGGTCTTGGTGCTATGGTGATCAAGTGGCACAAGAGGCCTCAAGACTGGCAAAAGAGAAATAGCTTCTCTTCATGGTTACTTCCTTTACATGCTGGTGATACAAGCTTCATGAGCAGCAAGAACTCGATGGGAAAGAGCAACTTCTACTCCTCATCAATGGGTTTAGGCCGGTTTTTCTCCTTTGCAGAATTACAAGAAGCCACCAAAAACTTTGATTCAAAAAACATTATTGGTGTTGGTGGATTTGGTAATGTCTACTTGGGTGTGATTGATGAGGGGACTCAAGTTGCAGTTAAGAGAGGAAATCCACAATCAGAACAAGGTATCACAGAATTCCAAACTGAAATTCAAATGTTGTCCAAGCTTAGACACAGGCATTTGGTGTCCTTGATTGGATACTGCGATGAGAATGAAGAAATGATCCTGGTTTATGAATACATGCCTAATGGACATTTAAGAGACCATCTTTATGGAAAGAACATGCCTTCTCTATCATGGAAGCAAAGGTTAGATATATGTATTGGAGCAGCTCGTGGTCTTCACTATCTTCACACTGGCACAGCACAAGGTATCATTCACCGCGATGTTAAGACCACTAACATCTTGCTTGATGAGAATTTCACAGCCAAGGTTTCTGATTTTGGACTTTCAAAGGATGCACCAATGGGCCAGGGTCATGTTAGCACTGCAGTGAAGGGTAGCTTTGGTTATCTAGACCCTGAGTACTTCAGGAGGCAGCAATTGACAGAAAAATCAGATGTGTACTCTTTTGGGGTGGTTCTTCTAGAGGCATTATGTGCAAGGCCAGCCATTAACCCTCAGTTACCGCGAGAACAAGTTAACTTAGCTGATTGGGCAATGCAATGGAAGAGGAAGGGCTTGCTTGACAAGATCATTGACCCTCTCCTTGTTGGTTCAATTAATCCTGAATCTATGAAGAAGTTTGCTGAGGCTGCTGAGAAGTGTTTGGCTGATCATGGAGTTGATAGGCCTTCAATGGGAGATGTTTTGTGGAACTTGGAGTATGCATTGCAACTTCAAGAAGCTTTCACACAAGGAAAGGTTGAGGATGAGACTAAGTCCTCTGCAGCTGTTCCTACTTCACCTGCTCCCACAACACCTTCCACCACCTCTGATAACCACCCAGTTGCTCCTACAGAAGTAAATGATGGTCCACCACAAGTACCAGCTATTGATGACCATTCTGGAACTGCAGCGTTTGCACAGTTTGGTAATATCAGTGGCAGGTGA	2529	0.427	MAILLVILLAFSSPIFSAGLPSSSFIPKDNFLIDCGAENVATLPDGRQFKSDPQAKSFLQANDEYKVSADGVNVPSPIYSNARIFIQEAKYSFHLVQPGFHWVRLHFYPIKNNVFDLQKATFSVNTDTYVLLHSFNVNNNEKPILKEYLINVTQPQFTISFIPLKNSAAFINAIEVVSAPDNLIFDNGAGLFPVAEFTGLTAYAFQPVFRLNNGGSLITSSNDTLARTWESDEPFLTNKNLAKNVSVATSAIKFPKDTPTISPLIAPQTVYASATEMGDAGVNQPNFNVSWKFDVDTSFSYLVRLHFCDIVSKGLNELYFNVYVNGKMAIPNLDLSAITGALSTPYYKDIVVNATLMSQGLTVQVGPAKSDGGDANAILNGIEVLKISNSVNSLDGEFGVDGRKASGSNRGTVAAVGFAMMFGAFVGLGAMVIKWHKRPQDWQKRNSFSSWLLPLHAGDTSFMSSKNSMGKSNFYSSSMGLGRFFSFAELQEATKNFDSKNIIGVGGFGNVYLGVIDEGTQVAVKRGNPQSEQGITEFQTEIQMLSKLRHRHLVSLIGYCDENEEMILVYEYMPNGHLRDHLYGKNMPSLSWKQRLDICIGAARGLHYLHTGTAQGIIHRDVKTTNILLDENFTAKVSDFGLSKDAPMGQGHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLLEALCARPAINPQLPREQVNLADWAMQWKRKGLLDKIIDPLLVGSINPESMKKFAEAAEKCLADHGVDRPSMGDVLWNLEYALQLQEAFTQGKVEDETKSSAAVPTSPAPTTPSTTSDNHPVAPTEVNDGPPQVPAIDDHSGTAAFAQFGNISGR	842

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi2239g00013	842	MobiDBLite	consensus disorder prediction	779	826	-	-
	Gabi2239g00013	842	ProSitePatterns	Protein kinases ATP-binding region signature.	503	525	IPR017441	GO:0005524
	Gabi2239g00013	842	FunFam	Receptor-like protein kinase FERONIA	204	389	-	-
	Gabi2239g00013	842	PANTHER	OS07G0166700 PROTEIN	483	773	IPR045272	GO:0004714\|GO:0006468
	Gabi2239g00013	842	CDD	STKc_IRAK	503	767	-	-
	Gabi2239g00013	842	FunFam	Putative receptor-like protein kinase	30	180	-	-
	Gabi2239g00013	842	Pfam	Malectin-like domain	33	386	IPR024788	-
	Gabi2239g00013	842	FunFam	receptor-like protein kinase FERONIA	460	572	-	-
	Gabi2239g00013	842	SMART	serkin_6	497	769	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi2239g00013	842	Gene3D	Transferase(Phosphotransferase) domain 1	573	791	-	-
	Gabi2239g00013	842	Gene3D	Phosphorylase Kinase; domain 1	459	572	-	-
	Gabi2239g00013	842	SUPERFAMILY	Protein kinase-like (PK-like)	480	764	IPR011009	-
	Gabi2239g00013	842	FunFam	Receptor-like protein kinase FERONIA	573	787	-	-
	Gabi2239g00013	842	Pfam	Protein tyrosine and serine/threonine kinase	500	694	IPR001245	GO:0004672\|GO:0006468
	Gabi2239g00013	842	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	617	629	IPR008271	GO:0004672\|GO:0006468
	Gabi2239g00013	842	Gene3D	-	205	389	-	-
	Gabi2239g00013	842	Gene3D	-	30	180	-	-
	Gabi2239g00013	842	ProSiteProfiles	Protein kinase domain profile.	497	769	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi2239g00013	842	MobiDBLite	consensus disorder prediction	782	810	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi2239g00013	Gabi-Chr2239	148863	151409	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi2239g00013	23	842	Receptor kinase-like Gene Family	AT4G39110	68.029	0.0	1181

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CrRLK1L-1	Gabi2239g00013		Malectin_like	4.6e-38	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi2239g00013	-		-	gmx:100790759	1499.57