Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2239g00008 ATGGCTGGAGCATTTGTTGGTGGTGCCCTTCTTTCTGCTTTCCTTCAAGTGGCAATTGACAGGCTGGCTTCTCCTGAAGTTGTGGACTACTTTCGAGGAAGAAAACTCAATGAGAAGCTGCTGAACAGGTTCAACAGCAAGCTGCTTTACATCAATGCTGTGCTTGATGATGCAGAACAAAAGCAGATCAGAAACCAACATGTGAAGACCTGGCTTGATAAGGTCAAAGATGCTGTGTTTGAAGCAGAAGATTTGGTCGATGAAATAGACACTCAAGTCACCAAATGCAAGCTGAAAGCCGAGTCTCAGATCAATACTAGCAAGGTATGGACTTTCTTCAGTCGAGTTTCTGTTAGTTCATTTGACAAGGCAATTAAATCGAGGATGGAAAAAGTCCTTGACAACCTAGAATATCTTGCAAGCCAAAAGGATATACTAGGTTTGAAAGAAGCTAGTGGTTTTGGTCTTGGTCTTGGATCAGGAAGTCAAGTGTCACCAACTTTGCCAACATCATCTTTGCTAGGTGAAACTGTTGTATATGGTAGAGATGATGACAAAGATATTATCTTTAATTGGCTGACATCTTATGCTCAGAATGATAACAAGCTATCAATAATTTCTATAGTGGGTATGGGCGGGATGGGTAAGACCACACTTGCCCAACATTTATACAATGATCCAAGGATGGATGGTGAATTTGATCTCAAGGCTTGGGTCTGCGTTTCAGATGAATTTGATGTTTTTAAGTTGACAAGAGCTATTCTTGAGGCAATCACTAGATCAACTGATGATGGCAGAGACTTGAATATGCTTCAAGAAAGATTGAAGGCAAAATTAACAGAAAAGAAATTTCTTCTGGTTTTGGATGATGTCTGGAACGAAAACCGCATGCAATGGGAAGCTTTGCAAACTCCTCTTAATTACGGGGCCCGGGGAAGCGAAATTCTTGTCACCACACGCAGTAAGCAAGTTGCTTCAGCTATGCGATCAGACAAAATGCATAGCCTCGAGCAATTACAAGAAAAACATTGCTGGCAATTGTTTGCTAAACATGCATTCCAAGATGAAAATACTCAGTTAAACCTTGAGTTCGAGGAGATTGGCACAAAAATAATTGAAAAATGCAAAGGATTGCCTCTGGCCTTGAAAACAATTGGAAGTCTCTTATATGGAAAATCATCAATTTCGGAATGGAAAAGTATACAAACAAGCGAGATATGGGATTTACCGGAAGAGGATAGCAATATTATCCCTGCTTTGAGACTGAGCTATCACCACCTTCCTTCTCATCTGAAGAGATGCTTTGCTTACTCTGCCTTATTCCCCAAAGATCATATATTTGAAAAGGAGTATTTGATTCTATTATGGATGGCTGAAAATTTTTTACAATGTCCTAAACAAGGTAAGAGCATAGAAGAAGTTGGTGAACAGTACTTCGATGATTTATTATCGAGGTGTTTTTTTCAAAGATCAAATGGAGATGAAATGCTTTTTTTCATGCATGACCTTCTCAATGATTTGGCCAAATATGTAAGCGGGGATTTTTGTTTCAGGTTGGAAGTTAAGGAAGCACAAAATATATCAAAAATGACTCGTCATTTTTCGTTTGTAACTAAGCATTACTATTATTTTGAAGTGCCTGAGGGTTTATGTGATGCTAAAAGGTTACGTACATTTCTCCCATTGAGTGAAATTTCCGAAGACAGATATTTTTCTTATTGGGAGTCTAGAATGTGGGTGCATAACTTGCTCTCCAAGTTGAAGTTCTTACGTGTCTTTTCTTTGCGTGGTAATCGCAATGTAAAAGAGTTGCCTGATTTTATATGCAATCTTAAATTACTCCGTTATTTGGACCTTTCGGGTACTGCAATCAGAAAGCTACCTGATTCCATATGTTTGCTCTACAACTTACAAACACTGAAGTTGTCATGTTGTCACAATTTGGAAGAGTTGCCCTTGAATTTGCATAAACTCACAAATTTGCGTCACCTTGATTTAGATGGAACTGAACTGAGAAAGATACCACCGCATTTGGAGAAATTAAAGAATCTACAAGTATTGTCTACATTTTACGTGGGCAAAGGTAGCGAGTCCAATATCGGGCAATTAGGAGAACTCAATCTCCATGGATCACTCTCAATTTCGGAGTTGCAGAATATTGTTAATCCCTCGGATGCATTAGCAGCGAATTTGTTAAATAAAATACACCTTGTGAATCTACATTTAGCATGGAGTGAAAAAAGCCATGATGATTCACAGAAAGAAAGGGAAGTACTCGAGAAGCTACAACCTTCCAAACACTTGAAAAAGCTGTCACTGACAAACTACGGTGGTACACGATTTGCAGATTGGTTTGGAGATAATTCATTATCCAATGTGGTGTCCTTAAAGTTGATCAACTGTAAAAATTGTATCTTGCTGCCCCCCCTTGGACTTCTGCCATATCTCAAGAATCTGTCAATTAAGGGGCTCCATGGGATAGTGGTTGTTGATGCTGAATTTTATGGGAGTAGCTCTTCTTCTTCTGCTGTTTCATTTCAATCCCTCGAAACCTTAAGCTTGGGCGATATGAAGGGATGGGAAAAGTGGGAATGTAAACTTTTGACGAGTGCTTTTCCACGTCTTCGAGAGCTTTGTATAGAGAATTGTCCCAAGCTGAAAGGGCACTTGCCGGAGCAACTTATTTGTTTAACGAAACTAGTTATTTATGAATGCCGACAGCTTGAGGCCTCTGTTCCCTGGGCTCCAACCATTGAAGAATTACAACTAGAGCATTGTGGAAAGGTGCAATTTGATTATCATCCATCTACTTTGAAAAGTTTAAAGATTGTTGGACGCTGCATGGAAGGATCTTCGCTTGAAAGGATTGGGCACAACAGTCTTGAAAAGTTGCACATTCATGATTGCCCAAATATGAATATTCCCATAAACCATTGCTACAATTTCCTTGTAGAATTGTGGATCATGAGTAGCTGTGAATCTCTAAGGACCTTTCCGCTGGATTTCTTTCCAAAACTCCGTTTGCTCTGTTTATTCGGTTGTATTAATCTTGAAATGGTTTCACAGGAGGAGCATGGCGGTAATCTCACATCTCTTACTCGCCTTGAAATAATTGATTGTCCACAACTTGAGTCGTTCTGTGGTGAAGGTTTGCCATCAAACCTAAGACATCTGCGTCTCTCCAAATGCTCCAAGCTTATGGGCTCACTGAAATGGCCTTTGAGAACAAACACTTCTCTAGTTTCCTTGCAAGTTGAAAAAGTGGATGTGGAGTCTTTTCCTGATCAAGGGTTGCTTCCTGTCTCTCTTAATAGTCTATGGATCAAAGATTGTCAAGATCTTATAAAACTGGACCACAATGGTCTCTGCAACCTCTCCTCTCTTACTGAATTGTGGCTTCAAGACTGCCCCAGACTCCAATGCTTACCGGAGGAAGGTCTGCCCAATTCCATTTCATCTCTAACCATTAGGGGCAATTGTCCGTTGCTCAAACAGCGTTGCCAGAAACCCAATGGTCAAGATTGCGGGAAAATTACCCACATTGAACACGTATACATTGATAATGATTATTGA 3573 0.3991 MAGAFVGGALLSAFLQVAIDRLASPEVVDYFRGRKLNEKLLNRFNSKLLYINAVLDDAEQKQIRNQHVKTWLDKVKDAVFEAEDLVDEIDTQVTKCKLKAESQINTSKVWTFFSRVSVSSFDKAIKSRMEKVLDNLEYLASQKDILGLKEASGFGLGLGSGSQVSPTLPTSSLLGETVVYGRDDDKDIIFNWLTSYAQNDNKLSIISIVGMGGMGKTTLAQHLYNDPRMDGEFDLKAWVCVSDEFDVFKLTRAILEAITRSTDDGRDLNMLQERLKAKLTEKKFLLVLDDVWNENRMQWEALQTPLNYGARGSEILVTTRSKQVASAMRSDKMHSLEQLQEKHCWQLFAKHAFQDENTQLNLEFEEIGTKIIEKCKGLPLALKTIGSLLYGKSSISEWKSIQTSEIWDLPEEDSNIIPALRLSYHHLPSHLKRCFAYSALFPKDHIFEKEYLILLWMAENFLQCPKQGKSIEEVGEQYFDDLLSRCFFQRSNGDEMLFFMHDLLNDLAKYVSGDFCFRLEVKEAQNISKMTRHFSFVTKHYYYFEVPEGLCDAKRLRTFLPLSEISEDRYFSYWESRMWVHNLLSKLKFLRVFSLRGNRNVKELPDFICNLKLLRYLDLSGTAIRKLPDSICLLYNLQTLKLSCCHNLEELPLNLHKLTNLRHLDLDGTELRKIPPHLEKLKNLQVLSTFYVGKGSESNIGQLGELNLHGSLSISELQNIVNPSDALAANLLNKIHLVNLHLAWSEKSHDDSQKEREVLEKLQPSKHLKKLSLTNYGGTRFADWFGDNSLSNVVSLKLINCKNCILLPPLGLLPYLKNLSIKGLHGIVVVDAEFYGSSSSSSAVSFQSLETLSLGDMKGWEKWECKLLTSAFPRLRELCIENCPKLKGHLPEQLICLTKLVIYECRQLEASVPWAPTIEELQLEHCGKVQFDYHPSTLKSLKIVGRCMEGSSLERIGHNSLEKLHIHDCPNMNIPINHCYNFLVELWIMSSCESLRTFPLDFFPKLRLLCLFGCINLEMVSQEEHGGNLTSLTRLEIIDCPQLESFCGEGLPSNLRHLRLSKCSKLMGSLKWPLRTNTSLVSLQVEKVDVESFPDQGLLPVSLNSLWIKDCQDLIKLDHNGLCNLSSLTELWLQDCPRLQCLPEEGLPNSISSLTIRGNCPLLKQRCQKPNGQDCGKITHIEHVYIDNDY 1190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2239g00008 1190 ProSiteProfiles Leucine-rich repeat profile. 613 634 IPR001611 GO:0005515
Gabi2239g00008 1190 SMART LRR_typ_2 611 634 IPR003591 -
Gabi2239g00008 1190 SMART LRR_typ_2 658 681 IPR003591 -
Gabi2239g00008 1190 SMART LRR_typ_2 1125 1149 IPR003591 -
Gabi2239g00008 1190 Gene3D Ribonuclease Inhibitor 570 944 IPR032675 -
Gabi2239g00008 1190 SUPERFAMILY L domain-like 500 1159 - -
Gabi2239g00008 1190 ProSiteProfiles Leucine-rich repeat profile. 660 682 IPR001611 GO:0005515
Gabi2239g00008 1190 Pfam NB-ARC domain 183 403 IPR002182 GO:0043531
Gabi2239g00008 1190 Gene3D Ribonuclease Inhibitor 946 1189 IPR032675 -
Gabi2239g00008 1190 FunFam Probable disease resistance protein At1g63360 424 510 - -
Gabi2239g00008 1190 SUPERFAMILY RNI-like 761 971 - -
Gabi2239g00008 1190 Gene3D - 338 428 IPR042197 -
Gabi2239g00008 1190 Gene3D - 19 138 - -
Gabi2239g00008 1190 FunFam Probable disease resistance protein At1g61300 162 333 - -
Gabi2239g00008 1190 PRINTS Disease resistance protein signature 375 389 - -
Gabi2239g00008 1190 PRINTS Disease resistance protein signature 205 220 - -
Gabi2239g00008 1190 PRINTS Disease resistance protein signature 278 292 - -
Gabi2239g00008 1190 PRINTS Disease resistance protein signature 632 648 - -
Gabi2239g00008 1190 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 164 437 IPR027417 -
Gabi2239g00008 1190 Pfam Rx N-terminal domain 11 103 IPR041118 -
Gabi2239g00008 1190 PANTHER DISEASE RESISTANCE PROTEIN RP 47 940 IPR044974 GO:0006952
Gabi2239g00008 1190 Gene3D - 164 335 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2239g00008 Gabi-Chr2239 67911 71483 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2239g00008 206 441 WRKY Transcription Factor Family AT5G45050 28.216 7.06e-14 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2239g00008 - - gmx:100781012 1392.48