Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2236g00030 ATGAGCTGGCGTAGGGTTTTGAAGTCTGCACAGGCACTCGCTGCCCACACCTTTCTCTTGTGCTTCACTCTCTTCCTCCTTTTCAAGCTCGATCACCGTCTCTCGTGCTCTTGGTGGATAATATTTTCGCCTCTTTGGATGTTCCATGCCGTTGTGGCTCGAGGAAGGTTTTCATTACCAGCGCCATCAGCTCCCCGTAATCGACATTGGGCACCGTGCCATGCCATCGTTGCAACGCCATTGCTTATTGCATTTGAATTGCTCCTTTGTATATATCTTGAGAGCTTATATGTTCAAGGCATTGCCGCAGTCAATCTGAAGATTGTGTTCCTTCCCTTACTAACATTTGAAATCATTATTCTCGTTGACAATTTCAGAATGTGTAGGGCTCTAATGCCAGGGGATGAAGAAAACATGAGTGATACGGCAATATGGGAAACTCTTCCTCACTTTTGGGTTGCAATCTCTATGGTGTTCTTCATTGCTGCTACAGTTTTCACTCTCCTAAAACTGAGTGGTGATGTAGGTGCTCTGGGCTGGTGGGACTTATTTATTAACTTTGCTATCGCCGAGTGCTTTGCTTTTCTTGTATGTACAAAGTGGTCTAATCCGGTCATTCATAGAAATTCAAGAGAAGGCAGTTCAGCTTCTACTACTATTAGATATCTTGAATGGAACAGTGGTTTAATGGTTTCTTCTGAGGAAAATCAACACCAGGAGAGAATGTGTAGCCTGCAAGATGTAGGAGGTCATTTCATGAAAGTACCAGTTATTGTATTCCAGATTCTTCTTTGTATGCATTTAGAGGGAACACCTGCTTGTGCTGTATATATATCTCTTCCCGTTATTTTCTCTCCCCTTTTCCTACTGCAAGGTGCTGGTGTACTGCTATCTGCATCTAAATTGGTGGAGAAACTTGTGCTTATTGTACGAAGTGGAGCTGGTGGAGGAATATATTTTAGACTTTCTTCAACAGCTCATGATTGCTTGGGATTCTTGCGCCATGGTTCTAGATTATTAGGTTGGTGGTCAATTGATGAAGGGAGTCGGGAAGAACAGGCACAATTGTACCATGAGGGAGCATCTGGGTATAATACATTCTGTGGTTATCCTCCTGAGATTGTTAAGAAAATGCCTAAAAAGGATCTTGCTGAGGAGGTTTGGAGACTTCAGGCAGCTCTTGGTGAGCAGACGGAAATTACAAAATACAGCCAACAGGAGTATGAAAGACTTAAAAATGAGAAAGTGTTATGCAGAATTTGTTTTGAGGGAGAGATTGGCGTTGTATTGCTCCCATGCAGGCATCGTGTGCTTTGCAGTATTTGCTCGGAGAAGTGTAAGAAGTGTCCAATTTGCCGCGTCTCTATAGCAGAGCGCTTGCCTGTATACGATGTTTAG 1398 0.4328 MSWRRVLKSAQALAAHTFLLCFTLFLLFKLDHRLSCSWWIIFSPLWMFHAVVARGRFSLPAPSAPRNRHWAPCHAIVATPLLIAFELLLCIYLESLYVQGIAAVNLKIVFLPLLTFEIIILVDNFRMCRALMPGDEENMSDTAIWETLPHFWVAISMVFFIAATVFTLLKLSGDVGALGWWDLFINFAIAECFAFLVCTKWSNPVIHRNSREGSSASTTIRYLEWNSGLMVSSEENQHQERMCSLQDVGGHFMKVPVIVFQILLCMHLEGTPACAVYISLPVIFSPLFLLQGAGVLLSASKLVEKLVLIVRSGAGGGIYFRLSSTAHDCLGFLRHGSRLLGWWSIDEGSREEQAQLYHEGASGYNTFCGYPPEIVKKMPKKDLAEEVWRLQAALGEQTEITKYSQQEYERLKNEKVLCRICFEGEIGVVLLPCRHRVLCSICSEKCKKCPICRVSIAERLPVYDV 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2236g00030 465 Pfam Zinc finger, C3HC4 type (RING finger) 415 457 - -
Gabi2236g00030 465 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 393 463 IPR013083 -
Gabi2236g00030 465 FunFam Kinesin-like protein KIN-7D, mitochondrial 395 463 - -
Gabi2236g00030 465 ProSiteProfiles Zinc finger RING-type profile. 418 453 IPR001841 -
Gabi2236g00030 465 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 1 465 - -
Gabi2236g00030 465 SUPERFAMILY RING/U-box 410 460 - -
Gabi2236g00030 465 SMART ring_2 418 452 IPR001841 -
Gabi2236g00030 465 Pfam Transmembrane Fragile-X-F protein 29 290 IPR019396 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2236g00030 Gabi-Chr2236 247942 261442 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2236g00030 1 465 C3H Transcription Factor Family AT1G73950 72.043 0.0 685
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2236g00030 - - gmx:100791390 862.448