Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2236g00029 ATGAGCTGGCGTAGGGTTTTGAAGTCTGCACAGGCACTCGCTGCCCACACCTTTCTCTTGTGCTTCACTCTCTTCCTCCTTTTCAAGCTCGATCACCGTCTCTCGTGCTCTTGGTGGATAATATTTTCGCCTCTTTGGATGTTCCATGCCGTTGTGGCTCGAGGAAGGTTTTCATTACCAGCGCCATCAGCTCCCCGTAATCGACATTGGGCACCGTGCCATGCCATCGTTGCAACGCCATTGCTTATTGCATTTGAATTGCTCCTTTGTATATATCTTGAGAGCTTATATGTTCAAGGCATTGCCGCAGTCAATCTGAAGATTGTGTTCCTTCCCTTACTAACATTTGAAATCATTATTCTCGTTGACAATTTCAGAATGTGTAGGGCTCTAATGCCAGGGGATGAAGAAAACATGAGTGATACGGCAATATGGGAAACTCTTCCTCACTTTTGGGTTGCAATCTCTATGGTGTTCTTCATTGCTGCTACAGTTTTCACTCTCCTAAAACTGAGTGGTGATGTAGGTGCTCTGGGCTGGTGGGACTTATTTATTAACTTTGCTATCGCCGAGTGCTTTGCTTTTCTTGTATGTACAAAGTGTGGTTTAATGGTTTCTTCTGAGGAAAATCAACACCAGGAGAGAATGTGTAGCCTGCAAGATGTAGGAGGTCATTTCATGAAAGTACCAGTTATTGTATTCCAGATTCTTCTTTGTATGCATTTAGAGGGAACACCTGCTTGTGCTGTATATATATCTCTTCCCGTTATTTTCTCTCCCCTTTTCCTACTGCAAGGTGCTGGTGTACTGCTATCTGCATCTAAATTGGTGGAGAAACTTGTGCTTATTGTACGAAGTGGAGCTGGTGGAGGAATATATTTTAGACTTTCTTCAACAGCTCATGATTGCTTGGGATTCTTGCGCCATGGTTCTAGATTATTAGGTTGGTGGTCAATTGATGAAGGGAGTCGGGAAGAACAGGCACAATTGTACCATGAGGGAGCATCTGGGTATAATACATTCTGTGGTTATCCTCCTGAGATTGTTAAGAAAATGCCTAAAAAGGATCTTGCTGAGGAGGTTTGGAGACTTCAGGCAGCTCTTGGTGAGCAGACGGAAATTACAAAATACAGCCAACAGGAGTATGAAAGACTTAAAAATGAGAAAGTGTTATGCAGAATTTGTTTTGAGGGAGAGATTGGCGTTGTATTGCTCCCATGCAGGCATCGTGTGCTTTGCAGTATTTGCTCGGAGAAGTGTAAGAAGTGTCCAATTTGCCGCGTCTCTATAGCAGAGCGCTTGCCTGTATACGATGTTTAG 1320 0.4364 MSWRRVLKSAQALAAHTFLLCFTLFLLFKLDHRLSCSWWIIFSPLWMFHAVVARGRFSLPAPSAPRNRHWAPCHAIVATPLLIAFELLLCIYLESLYVQGIAAVNLKIVFLPLLTFEIIILVDNFRMCRALMPGDEENMSDTAIWETLPHFWVAISMVFFIAATVFTLLKLSGDVGALGWWDLFINFAIAECFAFLVCTKCGLMVSSEENQHQERMCSLQDVGGHFMKVPVIVFQILLCMHLEGTPACAVYISLPVIFSPLFLLQGAGVLLSASKLVEKLVLIVRSGAGGGIYFRLSSTAHDCLGFLRHGSRLLGWWSIDEGSREEQAQLYHEGASGYNTFCGYPPEIVKKMPKKDLAEEVWRLQAALGEQTEITKYSQQEYERLKNEKVLCRICFEGEIGVVLLPCRHRVLCSICSEKCKKCPICRVSIAERLPVYDV 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2236g00029 439 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 367 437 IPR013083 -
Gabi2236g00029 439 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 1 200 - -
Gabi2236g00029 439 SMART ring_2 392 426 IPR001841 -
Gabi2236g00029 439 Pfam Transmembrane Fragile-X-F protein 29 264 IPR019396 -
Gabi2236g00029 439 ProSiteProfiles Zinc finger RING-type profile. 392 427 IPR001841 -
Gabi2236g00029 439 SUPERFAMILY RING/U-box 384 434 - -
Gabi2236g00029 439 FunFam Kinesin-like protein KIN-7D, mitochondrial 369 437 - -
Gabi2236g00029 439 Pfam Zinc finger, C3HC4 type (RING finger) 389 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2236g00029 Gabi-Chr2236 247942 261442 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2236g00029 1 439 C3H Transcription Factor Family AT1G73950 76.538 0.0 702
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2236g00029 - - gmx:100791390 802.357