Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2236g00024 ATGTCATCAAGTGGAACCATATGGAGTTATGAAGAAGAAAAAGCATTTGAGAATGCCATTGCTATGCATTGGATTGAGGAAGACTCAAAAGAGCAATGGGAGAAGATTGCTTCAGCTGTTCCAAACAAAAGCATGGAAGAAGTGAAGCAACATTACCAGGTACTAGTAGATGATGTAAGTGCAATAGAGAAAGGTCATATATCATTTCCAAACTATACTTCAGAGGAAACTACTTCTTCAAATAAGGATTTCCATGGCTCTTCCAAGGCTACAACTTCAGATAAGAGATCAAATTGTAATTATGGAAGTGGGTTTTCTGGATTAGGACATGAATCCACCACACATAGTGGTAAAGGAAGCTTGTCAAGGTCATCAGAACAAGAAAGGAGAAAAGGAATTCCATGGACAGAGGAGGAGCACAGGTTATTTTTACTTGGTCTAGATAAGTTTGGGAAAGGAGATTGGAGAAGCATTTCAAGGAACTTTGTGATATCTAGGACTCCAACTCAAGTGGCAAGCCATGCACAAAAGTACTTCATAAGGTTGAATTCCATGAATAGAGACAGAAGGAGGTCTAGTATCCATGATATTACTAGTGTAAACAATGGAGATGTGGCTAGTAATCAGGCACCAATTACAGGCCAGCATAGTAGTAGCACAATCCCTTCAAGTACAATGGCTGTGGGACACTCACTTAAGAATAGAGGGATTCAGCCCCATATAGGTGCTGGTTTAGGTATGTATGGAACACCAGTTGGACATCCTGTGGCTGCTCCTCATGGGCATATGGCATCTGCAGTTGGGACTCCTGTCATGCTTCCTCCTGGACCCCATCCCCATCCCCATGCCCATGCTCATGCCCATCCTCATCCACCTTATGTTGTTCCTCTTGCTTACCCAATGGCACCTCCAACCATGCACCAATAA 927 0.4272 MSSSGTIWSYEEEKAFENAIAMHWIEEDSKEQWEKIASAVPNKSMEEVKQHYQVLVDDVSAIEKGHISFPNYTSEETTSSNKDFHGSSKATTSDKRSNCNYGSGFSGLGHESTTHSGKGSLSRSSEQERRKGIPWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKYFIRLNSMNRDRRRSSIHDITSVNNGDVASNQAPITGQHSSSTIPSSTMAVGHSLKNRGIQPHIGAGLGMYGTPVGHPVAAPHGHMASAVGTPVMLPPGPHPHPHAHAHAHPHPPYVVPLAYPMAPPTMHQ 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2236g00024 308 PANTHER TRANSCRIPTION FACTOR KUA1 4 302 - -
Gabi2236g00024 308 NCBIfam myb-like DNA-binding domain, SHAQKYF class 131 181 IPR006447 GO:0003677
Gabi2236g00024 308 Gene3D - 1 69 - -
Gabi2236g00024 308 ProSiteProfiles SANT domain profile. 3 52 IPR017884 -
Gabi2236g00024 308 SMART sant 4 58 IPR001005 -
Gabi2236g00024 308 SMART sant 131 181 IPR001005 -
Gabi2236g00024 308 MobiDBLite consensus disorder prediction 71 133 - -
Gabi2236g00024 308 CDD SANT 8 56 IPR001005 -
Gabi2236g00024 308 FunFam transcription factor MYB1R1 133 184 - -
Gabi2236g00024 308 CDD SANT 134 179 IPR001005 -
Gabi2236g00024 308 ProSiteProfiles Myb-like domain profile. 127 179 IPR001005 -
Gabi2236g00024 308 ProSiteProfiles Myb-like domain profile. 8 56 IPR001005 -
Gabi2236g00024 308 Pfam Myb-like DNA-binding domain 134 179 IPR001005 -
Gabi2236g00024 308 Pfam Myb-like DNA-binding domain 8 55 IPR001005 -
Gabi2236g00024 308 SUPERFAMILY Homeodomain-like 129 184 IPR009057 -
Gabi2236g00024 308 ProSiteProfiles SANT domain profile. 135 183 IPR017884 -
Gabi2236g00024 308 MobiDBLite consensus disorder prediction 71 121 - -
Gabi2236g00024 308 SUPERFAMILY Homeodomain-like 6 60 IPR009057 -
Gabi2236g00024 308 Gene3D - 133 185 - -
Gabi2236g00024 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 127 183 IPR017930 -
Gabi2236g00024 308 FunFam Transcription factor SRM1 1 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2236g00024 Gabi-Chr2236 234602 236112 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi2236g00024 Myb_DNA-binding 7.9e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2236g00024 - - gmx:100812196 517.694