Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2234g00028 ATGAAGGGTGATACCATTTCCAGGGTTAGAAAACCACGCAAGAGACGCAGTGGTGGAAGTGATTCAGTGGAAAACACACTTGAGAAGTGGAAGAAGTATAACAGGCAACAACAACTTGGTTGTGGAGAAAATGGTGTGGAAGTGATTCACAAAGTTCCTGCAAAGGGTTCAAGAAAAGGGTGCATGAGAGGTAAAGGAGGGCCTCAGAATTCTGATTGCAAGTTCAGAGGTGTGAGGCAGAGGATTTGGGGTAAGTGGGTTGCTGAGATTCGTGAACCAATCTCATGTAAGCATGTTTGTGAGAAGAAACCAAATAGGCTTTGGCTTGGTACTTTCTCTACTGCACTTGAAGCTGCTCTTGCTTATGATGAAGCAGCTAGAGCTATGTATGGCCCTTGTGCCTATTTGAACTTTCCTGAGTCTACAGTGAAGGAAATAGTATCTAATGATGGATCATCATCTAGTGCTTATGATAAAAAATCACCAAGTGGTGGTTATGTGGATACTTTGAATGGTGGTGATCTTGCTAAAGATGATGTGTTTGAGGGGAATCTTCATCAGTCTCATGAAGACAAAGCCAAATTTTCTGAGGTTGGTGTCTTTGAGGAATCACAAGAGGAACTGGTTCATTCTGAAGCTTGGGTGGCTGATGTGTCAATAGAAGAATCAAAGGAATTGGCAATTGGCACTGTCCAATGTCAAACAAATGAGAAATGTAAGGCAATAATTCATCAAGGGTCTTTCAAGAATGGAATAAATGGAGACAGTGAAGAAATAGAGAGTGAATCAGAGAAGGTTTTGAAAAACTCTAAGGAGCCTATGGATATAGCAAGAAATACAGAAGCTGATTGTAGCTCTTCTGATAATACTGAACGTGTGAAGAGTGAAGAAACAAGAGGAGAATCAGTGGAAACTTTGAAATCATGTGAGTTAAGCCATAGGGAGGAAGTAATTTCTGAAATCATGGAACTTTGTAGCAGGAAGTGCTCTACGATTAGCCATGTTCATTCACAAAATGAGCAATATAAAAATGAACAGTTTGATGAGATGAAAACTGAGCTTAAGAGTTTGGATTGCAAGCTGAGAGCCCATTCTATTGATTGCAAAAACGAGACACCTAAAGTAGAGGATTCCTATCATTCCATGCAAGGAATTCATGTGTTAGGTGGTGGCACTGTTGGACAAATTGAAAGAATATCCCAAGTTGAGGCTTTGAACATCAATACTAATAGGAAGTTTTGTGATATTTCTCAACAGCTACAGAAACTGGGTGGTTACCTTCCTGGACATTTGAATAATATGCAAACTGCAGAGTTGGAAGTGGGTTATGATTATAGTTTCTTAAGTCCTGACTATGATTTTGGGTTATTGGAAGAACAGAAGTTACTTGATGTATGCTTCTCACATATAGGATCTTAA 1419 0.3961 MKGDTISRVRKPRKRRSGGSDSVENTLEKWKKYNRQQQLGCGENGVEVIHKVPAKGSRKGCMRGKGGPQNSDCKFRGVRQRIWGKWVAEIREPISCKHVCEKKPNRLWLGTFSTALEAALAYDEAARAMYGPCAYLNFPESTVKEIVSNDGSSSSAYDKKSPSGGYVDTLNGGDLAKDDVFEGNLHQSHEDKAKFSEVGVFEESQEELVHSEAWVADVSIEESKELAIGTVQCQTNEKCKAIIHQGSFKNGINGDSEEIESESEKVLKNSKEPMDIARNTEADCSSSDNTERVKSEETRGESVETLKSCELSHREEVISEIMELCSRKCSTISHVHSQNEQYKNEQFDEMKTELKSLDCKLRAHSIDCKNETPKVEDSYHSMQGIHVLGGGTVGQIERISQVEALNINTNRKFCDISQQLQKLGGYLPGHLNNMQTAELEVGYDYSFLSPDYDFGLLEEQKLLDVCFSHIGS 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2234g00028 472 SMART rav1_2 74 145 IPR001471 GO:0003700|GO:0006355
Gabi2234g00028 472 MobiDBLite consensus disorder prediction 1 27 - -
Gabi2234g00028 472 ProSiteProfiles AP2/ERF domain profile. 74 139 IPR001471 GO:0003700|GO:0006355
Gabi2234g00028 472 MobiDBLite consensus disorder prediction 285 301 - -
Gabi2234g00028 472 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 10 356 - -
Gabi2234g00028 472 MobiDBLite consensus disorder prediction 253 301 - -
Gabi2234g00028 472 CDD AP2 73 141 IPR001471 GO:0003700|GO:0006355
Gabi2234g00028 472 FunFam Ethylene-responsive transcription factor 2 73 140 - -
Gabi2234g00028 472 PRINTS Ethylene responsive element binding protein signature 75 86 IPR001471 GO:0003700|GO:0006355
Gabi2234g00028 472 PRINTS Ethylene responsive element binding protein signature 105 121 IPR001471 GO:0003700|GO:0006355
Gabi2234g00028 472 Pfam AP2 domain 73 131 IPR001471 GO:0003700|GO:0006355
Gabi2234g00028 472 MobiDBLite consensus disorder prediction 255 278 - -
Gabi2234g00028 472 Gene3D AP2/ERF domain 73 141 IPR036955 GO:0003700|GO:0006355
Gabi2234g00028 472 SUPERFAMILY DNA-binding domain 74 141 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2234g00028 Gabi-Chr2234 247017 248686 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2234g00028 13 156 AP2-EREBP Transcription Factor Family AT2G40340 53.425 2.20e-40 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi2234g00028 AP2 7.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2234g00028 - - gmx:100500303 558.14