LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi2234g00010	ATGAGGACATCTTTCACTGACCTTCTTTCCAACCATAACAACAGCAACAACAACAGTAACATGACCATGGATGATGATTACTGGGAAACTAGTGAACTTAAAACTGATCATCAAGTTGGACTTGATGTTGTTCCCAAATTCAAGTCTGTTCAACCTCCCTCACTGCCCCTCTCTCCCTCACCAATTTCCCCTTCTTCTTACTTTGCTTTTACTTCTGCTCTCAGCCCAACTGAGTTCTTGAACTCTTCTTTGTTTCTTTCTTCTCCAAATATTTTTGCATCTCCTACTACTGAGGCTTTTGCTGGCCAGTGCTTGAACTGGAGGAACAGTTCAGGTGAAGACCAACAACATGACAAGGAGTATGAGAAAAACTACTCTGACTTCTCTTTCCAAACCCAAACAAAGCCTGCATCTGTCCTTCAATCTTCTACAAGCATGTTTGAAGTGGAACCACTTAAGAAACAAGACATATGGAAATTCAATGAACCTAAGAAGCAAACTGATTTTTCATCTGAGAGGACAGCTACAAAATCTGAATACCCTTCAACTCACAGCTTTTCCTCAGAAATGGCATCAAGCAAACCAGAAATACAAAGTAATTCAGTTACTGGGTCTGGTTATTTTAACTACACTAATGCATCTCAGTCTGTTAGAGAACAGAAGAGAACAGAAGATGGGTACAATTGGAGAAAATATGGACAGAAACAAGTGAAAGGAAGTGAAAATCCACGCAGTTATTACAAGTGCACACATCAAAATTGCTCAATGAAGAAGAAAGTTGAAAGGTCTTTGGATGGACAAATTACTGAAATAGTATATAAAGGCAGTCATAACCATCCCAAACCCCAGTCTACTAGAAGAACTAGCTCTCAACCAATTCATCAACCTTCTTCATCCTGCACCAACTCAGGGATTTCTGATCAATCAGTGGTGACCCTAGGCAATCCACAAATGGAGCCTGTCTCCATACAAGAAGATTCTTCAGCCTCAGTGGGAGAGGAAAGCTTTGAGCAAACATCACAAACCAGTTATTCTGGAGGAGATGAAGATGACCTTGGACCTGAGGCCAAAAGATGGAAGGGAGAGAATGGAAATGATGGCTATTCTATCTCAGGGAGTAGAACTGTTAGGGAACCTAGAGTTGTTGTTCAAACCACAAGCGAAATTGATATACTTGATGATGGCTTTAGGTGGAGAAAATATGGACAGAAAGTAGTTAAAGGAAATCCAAATGCAAGAAGCTATTACAAATGCACAGCCCCTGGTTGTTCAGTGAGGAAACATGTTGAGCGAGCTGCACATGATATCAAAGCTGTAATCACAACTTATGAAGGGAAACACAACCATGATATACCTGCAGCACGTGGGAGTGCAAGTTATAACATGAACAGAATTTCTCTGAATAGCAACACTAGCAATGTACCAGCACCTATAAGGCCTTCAGCGGTGAACCATTATTCTAGCACATCAAGTTTCACAAACTCACTTTACAATGGCATGCTTCCAACAACTGGAAGTCAAGAATCATTTCCATTGGACATGTTGCAGAGCCCTGGAAGTTTTGGTTATTCTGCTCTTGGTAGATCAATGGGTTCATATACCAATCATGAACAATAA	1617	0.4063	MRTSFTDLLSNHNNSNNNSNMTMDDDYWETSELKTDHQVGLDVVPKFKSVQPPSLPLSPSPISPSSYFAFTSALSPTEFLNSSLFLSSPNIFASPTTEAFAGQCLNWRNSSGEDQQHDKEYEKNYSDFSFQTQTKPASVLQSSTSMFEVEPLKKQDIWKFNEPKKQTDFSSERTATKSEYPSTHSFSSEMASSKPEIQSNSVTGSGYFNYTNASQSVREQKRTEDGYNWRKYGQKQVKGSENPRSYYKCTHQNCSMKKKVERSLDGQITEIVYKGSHNHPKPQSTRRTSSQPIHQPSSSCTNSGISDQSVVTLGNPQMEPVSIQEDSSASVGEESFEQTSQTSYSGGDEDDLGPEAKRWKGENGNDGYSISGSRTVREPRVVVQTTSEIDILDDGFRWRKYGQKVVKGNPNARSYYKCTAPGCSVRKHVERAAHDIKAVITTYEGKHNHDIPAARGSASYNMNRISLNSNTSNVPAPIRPSAVNHYSSTSSFTNSLYNGMLPTTGSQESFPLDMLQSPGSFGYSALGRSMGSYTNHEQ	538

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi2234g00010	538	SUPERFAMILY	WRKY DNA-binding domain	384	452	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Gabi2234g00010	538	SUPERFAMILY	WRKY DNA-binding domain	219	282	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Gabi2234g00010	538	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	127	473	IPR044810	GO:0003700
	Gabi2234g00010	538	Gene3D	WRKY domain	379	445	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Gabi2234g00010	538	FunFam	WRKY transcription factor	212	283	-	-
	Gabi2234g00010	538	Pfam	WRKY DNA -binding domain	224	280	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Gabi2234g00010	538	Pfam	WRKY DNA -binding domain	393	449	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Gabi2234g00010	538	SMART	WRKY_cls	392	451	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Gabi2234g00010	538	SMART	WRKY_cls	223	281	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Gabi2234g00010	538	ProSiteProfiles	WRKY domain profile.	387	452	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Gabi2234g00010	538	MobiDBLite	consensus disorder prediction	1	21	-	-
	Gabi2234g00010	538	MobiDBLite	consensus disorder prediction	278	347	-	-
	Gabi2234g00010	538	FunFam	WRKY transcription factor 33	379	445	-	-
	Gabi2234g00010	538	MobiDBLite	consensus disorder prediction	173	198	-	-
	Gabi2234g00010	538	Gene3D	WRKY domain	209	283	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Gabi2234g00010	538	ProSiteProfiles	WRKY domain profile.	218	282	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Gabi2234g00010	538	MobiDBLite	consensus disorder prediction	164	198	-	-
	Gabi2234g00010	538	MobiDBLite	consensus disorder prediction	273	372	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi2234g00010	Gabi-Chr2234	62164	64826	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi2234g00010	44	524	WRKY Transcription Factor Family	AT2G38470	46.881	1.63e-110	337

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Gabi2234g00010		WRKY	1e-23	CL0274