Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2230g00018 ATGTCATGGTCACGAGGAAGAGGAAGAGCACCACCAACACCAACACCACCAACAACACTAGTGGGGTTTGTTATGCTTGCCTTATTGATGATAATAACAACAACAACAACAACCTCAACATGTTGTGTTTATGCTTATGCTGCTAATGAAGATGTTTCCTTCTTGATGAGTTTCAAGCAGTTACATGTTTCCTCTGATCCAAACAACTTCCTAACTGACTGGACCTCAAACTCGTCCTCTCCTTGCACCTGGCGCGCCGTAACTTGCTCCTCCTCCGGCGACGGCGACGGCCACGTCACCGCTCTCAACCTCACCGGAGCATCCCTCACCGGAACCCTCCACCTTCCAACTCTCACATCAATACCCTCTTTGAAACACCTCTTATTGCATGGTAATTCCTTCACAGCTTTCAACTTTTCTGTTTCACCCTCTTGCATGCTTCGAACACTCGACCTTTCAGCTAACAACTTTTCCGGCAAGTTCCCCTTCTCGAACCTTCTTCCGTGTAACAGCCTCGGTTATCTTAACTTGTCTCGGAATCTCATAACTGAAGCCGTTGGGTTCGGTTTCGCTTCTTCATTGCTCCAACTTGATTTGTCTCTGAACCGGTTTTCTGACCTTAAGTTTTTGTCCTATGTTGTTGGTAACTGTCAGGGTTTGGTTCTGCTTAATTTCTCTGATAACCGACTCGCGGGTCAACTCGGTGGGAGTGAAACTCTGGTTCCTTGCACAAACCTAACTACCTTCGACCTGTCTCATAATTTGTTGTCTGGGAAGATACCTAGTCTTTTGTTGGGTGATGCTGTTCAGGTTTTGGATCTGTCTGGCAACAATTTTTCTGTTGGGTTTTCTGAGTTTGATTTTGGGCACTGTAAGAGTCTTGTTTCTTTGAGTTTCTCTCACAATGCGCTTTTGGGTGGGGAGTTTCCACCCAGCTTGAGGAACTGTGAGGTTATGGAGAGATTAGATCTTTCTTACAATGAACTGAAGATGAAGATTCCTGGGGCTCTTCTTGGTGGTCTCAAGAGTTTGAGGGAACTGTTTTTGGGGCATAATCAGTTTTATGGAGAAATACCTGGTGAGCTTGGAATGGCTTGTGGGTCTCTTATTGTGCTTGATTTATCTGAGAATAAGCTTTATGGTGAGTTGCCTTTCACCTTTGGGAAGTGTGGTTCTTTGCAAAGTCTCAACCTTGCTAAGAATTATCTCTCTGGGAACTTCCTTGACTCAGTTGTGAGCAGGATTTCTAGTCTTAGATCTCTCTTTGTGCCATTCAATAATATAACTGGACCTGTTCCTTTGTCTCTTGCCAATTGTACACAGCTTCTGGTTCTTGACCTGAGTTCCAATGCCTTCACCGGCAATATCCCTTCTGGGTTTTGTCCCTCAGGGTTGGAAAAGATGCTCCTTGCTGACAATTACCTTTCAGGGGTGGTGCCTGCAGAGCTTGGTGGGTGCACGAAGTTGAGGACAATTGATTTTAGCTTTAATAATTTGAAAGGCCCAATACCCTCAGAGATTTGGTCCTTGCCCAATCTTTCTGACTTGATTATGTGGGCAAACAACCTCACTGGTGAGATTCCAGAAGGGATCTGCGTCAATGGAGGGAACCTAGAGACCATGATTCTTAACAATAATCTCATTTCAGGCTCCATTCCTCAGTCAATTGCCAATTGCACCAATATGATGTGGGTGTCACTGGCCAGCAACCACATTACTGGGGAGATACCTTCTGGTATTGGGAATCTAAACAATCTAGCTATCCTTCAATTGGGTAACAATTCACTAACTGGACAGATCCCCCCAGAGATTGGGAAGTGTAAGAGGCTCATATGGTTAGATTTCACTAGCAACAACCTCTCTGGTACTATCCCATCTGAGCTTGCCGATCAAGCTGGATTGGTTATTCCAGGAAGTGCTTCAGGGAAGCAGTTTGCATTTGTGAGAAATGAAGGTGGGACAAGTTGTAGGGGAGCTGGAGGGTTAGTTGAATTCGAGGATATCAGGGCTGAGAGGCTTGAAGGTTTTCCTATGGTCCATTCATGCCCTTTAACAAGAATATACTCTGGTTGGACTGTTTATACCTTCCCTTCCAATGGCAGCATGATTTACCTTGATCTCTCCTACAATTCATTGTCAGGAAGTATTCCTGGAAACTTTGGTGCAATGGCCTATTTACAGGTCTTAAATCTGGGACACAATAGGCTAACTGGAAACATTCCAGACAGCTTTGGTGGTCTAAAAGCCATAGGGGTGCTAGATCTCTCCCATAATAACCTTCAAGGGTTCATCCCTGGGTCATTAGAAGGTCTATCTTTTCTCAGTGACCTTGATGTGTCTAATAATAACCTTACAGGCTCCATTCCTTCTGGAGGTCAGTTAACCACTTTCCCTGCATCTAGATATGAAAACAACTCTGACCTTTGTGGGGTCCCATTATCACCATGTAGCTCCTTGAAGCACTCAGCAGGGTTACATACTCGGAAAAAGAAGCAACCTGTTGCAGAAGAGATTGTCATTGGCCTTGTTTTCTTCATCTTGTTTATTCTTGGGCTTGTGTTAGCTTTATATCAATTGAAGAAGCACCAAATGAAGGAGGAGCTGAGAGAAAAATACATAGAAAGTCTTCCAACTTCAGGTAGCAGCAGTTGGAAACTTTCCAGCTTTCCTGAGCCTCTAAGCATCAATGTTGCAACCTTTGAGAAACCTCTGCGCAAGTTGACATTTGCCCATCTTCTCGAGGCTACTAACGGTTTCAGTGCTGAAAGCTTGATAGGGTCTGGAGGGTTTGGTGAAGTCTACAAAGCTAAGCTAAAAGATGGCTGTGTTGTTGCTATCAAGAAGCTTATTCATGTCACAGGTCAGGGAGATAGAGAGTTCATGGCTGAAATGGAAACCATTGGGAAGATTAAACATCGAAACCTGGTTCAACTGCTTGGTTACTGCAAAATTGGAGAGGAGAGGCTTCTTGTTTATGAGTACATGAAATGGGGAAGTCTGGAGGCTGTTCTACATGACAGAGCCAAAGGAGGAGGTTCGAAGCTTGACTGGGCCGCTAGAAAGAAGATCGCCATAGGTTCAGCAAGAGGTCTTGCATTTCTTCACCATAGTTGCATACCTCACATTATACATCGGGACATGAAGTCCAGCAATATTCTTCTTGATGAAAATTTTGAGGCCAGAGTTTCAGATTTTGGCATGGCAAGGTTGGTTAATGCCCTTGACACTCATCTCACAGTCAGCACACTTGCGGGAACACCAGGTTATGTACCCCCTGAATACTACCAGAGTTTTAGATGCACAACAAAAGGGGATGTCTATAGTTACGGTGTCATACTGCTAGAGCTTCTGTCAGGGAAGAGGCCAATTGACTCATCCGAGTTTGGTGATGACAACAATCTTGTCGGATGGTGTAAGAAGCTTCACAGAGAGAAAAGAGTTAATGAAATACTTGATCCTGACTTGATTATGCAAAGATCTAGTGAAAGTGAACTATATCAGTGTTTGAGAATTGCTTTTGAATGTCTGGATGAGAGACCATACCGACGGCCAACCATGATACAAGTGATGGCAATGTTTAAAGAGCTTCAGGGTGACACAGATAGTGATATCCTTGATGACTTCTCTTTGAAAGACAATGTTATCAACGAAGCATGA 3657 0.4411 MSWSRGRGRAPPTPTPPTTLVGFVMLALLMIITTTTTTSTCCVYAYAANEDVSFLMSFKQLHVSSDPNNFLTDWTSNSSSPCTWRAVTCSSSGDGDGHVTALNLTGASLTGTLHLPTLTSIPSLKHLLLHGNSFTAFNFSVSPSCMLRTLDLSANNFSGKFPFSNLLPCNSLGYLNLSRNLITEAVGFGFASSLLQLDLSLNRFSDLKFLSYVVGNCQGLVLLNFSDNRLAGQLGGSETLVPCTNLTTFDLSHNLLSGKIPSLLLGDAVQVLDLSGNNFSVGFSEFDFGHCKSLVSLSFSHNALLGGEFPPSLRNCEVMERLDLSYNELKMKIPGALLGGLKSLRELFLGHNQFYGEIPGELGMACGSLIVLDLSENKLYGELPFTFGKCGSLQSLNLAKNYLSGNFLDSVVSRISSLRSLFVPFNNITGPVPLSLANCTQLLVLDLSSNAFTGNIPSGFCPSGLEKMLLADNYLSGVVPAELGGCTKLRTIDFSFNNLKGPIPSEIWSLPNLSDLIMWANNLTGEIPEGICVNGGNLETMILNNNLISGSIPQSIANCTNMMWVSLASNHITGEIPSGIGNLNNLAILQLGNNSLTGQIPPEIGKCKRLIWLDFTSNNLSGTIPSELADQAGLVIPGSASGKQFAFVRNEGGTSCRGAGGLVEFEDIRAERLEGFPMVHSCPLTRIYSGWTVYTFPSNGSMIYLDLSYNSLSGSIPGNFGAMAYLQVLNLGHNRLTGNIPDSFGGLKAIGVLDLSHNNLQGFIPGSLEGLSFLSDLDVSNNNLTGSIPSGGQLTTFPASRYENNSDLCGVPLSPCSSLKHSAGLHTRKKKQPVAEEIVIGLVFFILFILGLVLALYQLKKHQMKEELREKYIESLPTSGSSSWKLSSFPEPLSINVATFEKPLRKLTFAHLLEATNGFSAESLIGSGGFGEVYKAKLKDGCVVAIKKLIHVTGQGDREFMAEMETIGKIKHRNLVQLLGYCKIGEERLLVYEYMKWGSLEAVLHDRAKGGGSKLDWAARKKIAIGSARGLAFLHHSCIPHIIHRDMKSSNILLDENFEARVSDFGMARLVNALDTHLTVSTLAGTPGYVPPEYYQSFRCTTKGDVYSYGVILLELLSGKRPIDSSEFGDDNNLVGWCKKLHREKRVNEILDPDLIMQRSSESELYQCLRIAFECLDERPYRRPTMIQVMAMFKELQGDTDSDILDDFSLKDNVINEA 1218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2230g00018 1218 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1042 1054 IPR008271 GO:0004672|GO:0006468
Gabi2230g00018 1218 SMART LRR_typ_2 771 794 IPR003591 -
Gabi2230g00018 1218 SMART LRR_typ_2 723 746 IPR003591 -
Gabi2230g00018 1218 SMART LRR_typ_2 341 365 IPR003591 -
Gabi2230g00018 1218 SMART LRR_typ_2 510 534 IPR003591 -
Gabi2230g00018 1218 SMART LRR_typ_2 747 770 IPR003591 -
Gabi2230g00018 1218 SMART LRR_typ_2 583 607 IPR003591 -
Gabi2230g00018 1218 FunFam serine/threonine-protein kinase BRI1-like 2 880 994 - -
Gabi2230g00018 1218 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 190 463 - -
Gabi2230g00018 1218 SMART serkin_6 919 1193 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2230g00018 1218 Pfam Leucine rich repeat N-terminal domain 48 90 IPR013210 -
Gabi2230g00018 1218 Pfam Leucine rich repeat 726 784 IPR001611 GO:0005515
Gabi2230g00018 1218 Pfam Brassinosteroid receptor island domain 633 696 IPR045381 -
Gabi2230g00018 1218 FunFam Brassinosteroid LRR receptor kinase 995 1198 - -
Gabi2230g00018 1218 Gene3D - 640 697 - -
Gabi2230g00018 1218 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 696 816 - -
Gabi2230g00018 1218 Gene3D Ribonuclease Inhibitor 44 183 IPR032675 -
Gabi2230g00018 1218 Gene3D Transferase(Phosphotransferase) domain 1 995 1213 - -
Gabi2230g00018 1218 ProSiteProfiles Protein kinase domain profile. 919 1196 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2230g00018 1218 ProSitePatterns Protein kinases ATP-binding region signature. 925 948 IPR017441 GO:0005524
Gabi2230g00018 1218 SUPERFAMILY Protein kinase-like (PK-like) 900 1193 IPR011009 -
Gabi2230g00018 1218 Pfam Protein kinase domain 921 1191 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2230g00018 1218 SUPERFAMILY RNI-like 337 627 - -
Gabi2230g00018 1218 SUPERFAMILY L domain-like 694 817 - -
Gabi2230g00018 1218 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 413 1195 - -
Gabi2230g00018 1218 Coils Coil 1215 1218 - -
Gabi2230g00018 1218 FunFam Serine/threonine-protein kinase BRI1-like 1 640 697 - -
Gabi2230g00018 1218 SUPERFAMILY L domain-like 61 405 - -
Gabi2230g00018 1218 Gene3D Phosphorylase Kinase; domain 1 882 994 - -
Gabi2230g00018 1218 Gene3D Ribonuclease Inhibitor 190 817 IPR032675 -
Gabi2230g00018 1218 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 464 637 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2230g00018 Gabi-Chr2230 161080 165014 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2230g00018 28 1217 Receptor kinase-like Gene Family AT1G55610 61.723 0.0 1451
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Gabi2230g00018 Pkinase 3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2230g00018 - - gsj:114409366 1770.36